Rmu_sc0017178.1_g000006

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017178.1
OG0000592
Physical Location & Seq
Forward (+)
18379 .. 19759
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017178.1_g000006.1.cds

Sequence Viewer

Length: 1266 bp
atgcagttcaccttcttcaacatatctagatcaaatagctccctcttctccggttccggcaacaagggctgtgctaatataaagccttacaacgtatgggatggcttaccagatggctacatacccctctccggaaatccactacgggagcaccttgagttgttcattgacaaagcacctcggatcttcgagagggcaatcaaagaggtggaggctgaaacaggacataagtttggctgcttgatttcggatgcattattctggtttgctggagacatagccgagaaaatgcacgtcccttgggtgacatcatggattggtgaaatacgctcactttttgttcatatcgagactgatctaattagagatgaagtgggagctcctggacaagaaaacaaaaccctggagttccttccgggattctcagatgagtttcgagcatctgacttaaccaaggaaattgtatttggagaaatagaatcgccacttgcaagaatgttgcataaaatgggacagaagctgccacaagcagctgcagtagtcgtcaactctttcgaaacaatggatgtggaagttactgaggaactgaagaaaagactccaaaagttggtccttgttggtccactacatcttgtcatgccagtacaatcaattgtatcaaatgatgaggaggagaaggatggctgtttacagtggttggacaagcacgagcctgcttcggtagcatacgtcagctttggaactatggtggcactgcctcccatggaggtagcagcattagctgaggcattagaggaaggcggattcccctttctttggtcatttaggggaaatcaagaggactttccacaaggatttatcgaaagaaccaacgggttatccataggaaaagtagttccatgggtgaaccaagagaaaatcctcaatcatacctcggtaggagtgcatgtaacacactgcggttggaactcaattttggagagtgtaactagtggtgtgcctatgattgggaggccttactttgttgatcaaaatttaaatatgcggagtgtagaagttgtatggaagatcggtgtgaggattgagggaggcgttttcacaaaaactagagtagtcaaggccttggaacaagttttatcgcttgaacaaggaaaagaaatgagacagagaattggaatccttaaacagcttgctcaagaggctattggactgaatggacgttcgactcaagacttgaaagctttgatagagatcatcaagtcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

421

Amino Acids

47.0

Weight (kDa)

5.37

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 607
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 3 cut(s) 801, 960, 1045
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 1033
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 4 cut(s) 131, 607, 816, 1007
AgsI TTSAA 3 cut(s) 19, 1145, 1237
AhlI ACTAGT 1 cut(s) 989
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 2 cut(s) 382, 402
AjuI GAANNNNNNNTTGG 4 cut(s) 450, 482, 959, 991
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
AluBI AGCT 8 cut(s) 39, 380, 520, 533, 735, 782, 1189, 1241
AluI AGCT 8 cut(s) 39, 380, 520, 533, 735, 782, 1189, 1241
Alw21I GWGCWC 2 cut(s) 153, 382
Alw26I GTCTC 3 cut(s) 267, 344, 1156
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 2 cut(s) 1013, 1119
ApeKI GCWGC 5 cut(s) 237, 520, 530, 533, 773
ApoI RAATTY 1 cut(s) 1033
AspS9I GGNCC 2 cut(s) 610, 620
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 3 cut(s) 316, 332, 916
AsuII TTCGAA 1 cut(s) 555
AvaII GGWCC 2 cut(s) 610, 620
BanII GRGCYC 1 cut(s) 382
BauI CACGAG 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 153, 382
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 5 cut(s) 224, 507, 520, 542, 785
BccI CCATC 3 cut(s) 95, 107, 674
BciT130I CCWGG 2 cut(s) 384, 404
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 3 cut(s) 267, 344, 1156
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 3 cut(s) 27, 990, 1107
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 5 cut(s) 238, 521, 531, 534, 774
BlsI GCNGC 5 cut(s) 239, 522, 532, 535, 775
Bme1390I CCNGG 3 cut(s) 384, 404, 417
Bme18I GGWCC 2 cut(s) 610, 620
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 610, 620
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 384, 404, 417
BmsI GCATC 2 cut(s) 241, 449
BpmI CTGGAG 2 cut(s) 291, 425
Bpu10I CCTNAGC 1 cut(s) 783
Bpu14I TTCGAA 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 176, 1179, 1212
BpuMI CCSGG 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 1250
BsaJI CCNNGG 8 cut(s) 179, 299, 402, 453, 762, 899, 933, 1122
BsaWI WCCGGW 2 cut(s) 50, 131
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 607, 816, 1007
Bse1I ACTGG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 1250
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 2 cut(s) 384, 404
BseDI CCNNGG 8 cut(s) 179, 299, 402, 453, 762, 899, 933, 1122
BseGI GGATG 4 cut(s) 106, 256, 571, 685
BseJI GATNNNNATC 1 cut(s) 1250
BseLI CCNNNNNNNGG 4 cut(s) 131, 607, 816, 1007
BseMII CTCAG 3 cut(s) 438, 570, 774
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 683, 686
BseXI GCAGC 5 cut(s) 224, 507, 520, 542, 785
BshFI GGCC 2 cut(s) 1015, 1121
BsiHKAI GWGCWC 2 cut(s) 153, 382
BsiSI CCGG 4 cut(s) 51, 57, 132, 416
BslFI GGGAC 2 cut(s) 281, 525
BslI CCNNNNNNNGG 4 cut(s) 131, 607, 816, 1007
BsmAI GTCTC 3 cut(s) 267, 344, 1156
BsmFI GGGAC 2 cut(s) 281, 525
BsnI GGCC 2 cut(s) 1015, 1121
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 153, 382
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
Bsp19I CCATGG 2 cut(s) 762, 899
BspACI CCGC 3 cut(s) 801, 960, 1045
BspANI GGCC 2 cut(s) 1015, 1121
BspCNI CTCAG 3 cut(s) 437, 571, 775
BspEI TCCGGA 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 555
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 8 cut(s) 179, 299, 402, 453, 762, 899, 933, 1122
BssMI GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
BssSI CACGAG 1 cut(s) 707
BssT1I CCWWGG 5 cut(s) 299, 453, 762, 899, 1122
Bst2BI CACGAG 1 cut(s) 707
Bst2UI CCWGG 2 cut(s) 384, 404
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 714, 1191
BstDEI CTNAG 3 cut(s) 424, 579, 783
BstDSI CCRYGG 2 cut(s) 762, 899
BstF5I GGATG 4 cut(s) 106, 256, 571, 685
BstKTI GATC 6 cut(s) 32, 186, 358, 1030, 1071, 1254
BstMAI GTCTC 3 cut(s) 267, 344, 1156
BstMBI GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
BstMWI GCNNNNNNNGC 4 cut(s) 66, 722, 779, 1199
BstNI CCWGG 2 cut(s) 384, 404
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 3 cut(s) 382, 402, 415
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 5 cut(s) 224, 507, 520, 542, 785
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 2 cut(s) 1015, 1121
BtgI CCRYGG 2 cut(s) 762, 899
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 4 cut(s) 106, 256, 571, 685
BtsI GCAGTG 2 cut(s) 752, 955
BtsIMutI CAGTG 3 cut(s) 698, 752, 955
Cac8I GCNNGC 2 cut(s) 714, 1191
CaiI CAGNNNCTG 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 610, 620
Csp6I GTAC 1 cut(s) 644
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 5 cut(s) 312, 637, 763, 900, 947
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 3 cut(s) 424, 579, 783
DpnI GATC 6 cut(s) 31, 185, 357, 1029, 1070, 1253
DpnII GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
DraI TTTAAA 1 cut(s) 1038
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 816
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 5 cut(s) 299, 453, 762, 899, 1122
Eco147I AGGCCT 2 cut(s) 1015, 1121
Eco24I GRGCYC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 610, 620
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 382, 402
EcoT14I CCWWGG 5 cut(s) 299, 453, 762, 899, 1122
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 5 cut(s) 299, 453, 762, 899, 1122
FaeI CATG 5 cut(s) 315, 640, 766, 903, 950
FaqI GGGAC 2 cut(s) 281, 525
FatI CATG 5 cut(s) 311, 636, 762, 899, 946
FbaI TGATCA 1 cut(s) 1027
Fnu4HI GCNGC 5 cut(s) 238, 521, 531, 534, 774
FokI GGATG 4 cut(s) 113, 263, 578, 692
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 5 cut(s) 238, 521, 531, 534, 774
FspBI CTAG 3 cut(s) 27, 990, 1107
GluI GCNGC 5 cut(s) 238, 521, 531, 534, 774
GsuI CTGGAG 2 cut(s) 291, 425
HaeIII GGCC 2 cut(s) 1015, 1121
HapII CCGG 4 cut(s) 51, 57, 132, 416
Hin1II CATG 5 cut(s) 315, 640, 766, 903, 950
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 6 cut(s) 420, 479, 597, 804, 1176, 1225
HpaII CCGG 4 cut(s) 51, 57, 132, 416
HphI GGTGA 3 cut(s) 316, 332, 916
Hpy166II GTNNAC 5 cut(s) 9, 547, 623, 689, 907
Hpy188I TCNGA 4 cut(s) 183, 250, 427, 445
Hpy188III TCNNGA 8 cut(s) 27, 132, 190, 349, 836, 1196, 1229, 1263
Hpy8I GTNNAC 5 cut(s) 9, 547, 623, 689, 907
HpyAV CCTTC 4 cut(s) 22, 422, 670, 791
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 4 cut(s) 93, 294, 729, 1219
HpyCH4V TGCA 7 cut(s) 4, 254, 292, 491, 502, 536, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 722, 779, 1199
HpyF3I CTNAG 3 cut(s) 424, 579, 783
HpySE526I ACGT 4 cut(s) 93, 294, 729, 1219
Hsp92II CATG 5 cut(s) 315, 640, 766, 903, 950
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
LmnI GCTCC 4 cut(s) 44, 148, 377, 385
Lsp1109I GCAGC 5 cut(s) 224, 507, 520, 542, 785
LweI GCATC 2 cut(s) 241, 449
MaeI CTAG 3 cut(s) 27, 990, 1107
MaeII ACGT 4 cut(s) 93, 294, 729, 1219
MaeIII GTNAC 4 cut(s) 304, 574, 949, 985
MalI GATC 6 cut(s) 31, 185, 357, 1029, 1070, 1253
MboI GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
MboII GAAGA 5 cut(s) 7, 37, 178, 601, 1078
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 153, 382
MluCI AATT 6 cut(s) 360, 459, 651, 972, 1033, 1170
MlyI GAGTC 2 cut(s) 591, 1219
MmeI TCCRAC 2 cut(s) 678, 944
Mph1103I ATGCAT 1 cut(s) 256
MroI TCCGGA 1 cut(s) 131
MseI TTAA 3 cut(s) 449, 1037, 1182
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 4 cut(s) 51, 57, 132, 416
MspR9I CCNGG 3 cut(s) 384, 404, 417
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 2 cut(s) 384, 404
MwoI GCNNNNNNNGC 4 cut(s) 66, 722, 779, 1199
NciI CCSGG 1 cut(s) 417
NcoI CCATGG 2 cut(s) 762, 899
NdeII GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
NlaIII CATG 5 cut(s) 315, 640, 766, 903, 950
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 950
NspV TTCGAA 1 cut(s) 555
PceI AGGCCT 2 cut(s) 1015, 1121
PfeI GAWTC 4 cut(s) 420, 479, 804, 1176
PflMI CCANNNNNTGG 1 cut(s) 607
PfoI TCCNGGA 2 cut(s) 382, 415
PkrI GCNGC 5 cut(s) 239, 522, 532, 535, 775
PleI GAGTC 2 cut(s) 591, 1219
PpsI GAGTC 2 cut(s) 591, 1219
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 382, 402
PspGI CCWGG 2 cut(s) 382, 402
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 610, 620
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 449, 1037, 1182
SatI GCNGC 5 cut(s) 238, 521, 531, 534, 774
Sau3AI GATC 6 cut(s) 29, 183, 355, 1027, 1068, 1251
Sau96I GGNCC 2 cut(s) 610, 620
SchI GAGTC 2 cut(s) 591, 1219
ScrFI CCNGG 3 cut(s) 384, 404, 417
SduI GDGCHC 2 cut(s) 153, 382
SfaNI GCATC 2 cut(s) 241, 449
SfcI CTRYAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 555
SinI GGWCC 2 cut(s) 610, 620
SmiI ATTTAAAT 1 cut(s) 1038
SmlI CTYRAG 3 cut(s) 155, 1194, 1227
SmoI CTYRAG 3 cut(s) 155, 1194, 1227
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 6 cut(s) 360, 459, 651, 972, 1033, 1170
SseBI AGGCCT 2 cut(s) 1015, 1121
SsiI CCGC 3 cut(s) 801, 960, 1045
SspMI CTAG 3 cut(s) 27, 990, 1107
SstI GAGCTC 1 cut(s) 382
StuI AGGCCT 2 cut(s) 1015, 1121
StyD4I CCNGG 3 cut(s) 382, 402, 415
StyI CCWWGG 5 cut(s) 299, 453, 762, 899, 1122
SwaI ATTTAAAT 1 cut(s) 1038
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 4 cut(s) 96, 297, 732, 1222
TaqI TCGA 6 cut(s) 189, 348, 436, 555, 861, 1223
TasI AATT 6 cut(s) 360, 459, 651, 972, 1033, 1170
TatI WGTACW 1 cut(s) 643
TfiI GAWTC 4 cut(s) 420, 479, 804, 1176
Tru1I TTAA 3 cut(s) 449, 1037, 1182
Tru9I TTAA 3 cut(s) 449, 1037, 1182
TscAI CASTG 3 cut(s) 698, 759, 962
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 5 cut(s) 237, 520, 530, 533, 773
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 154, 332, 384
TspRI CASTG 3 cut(s) 698, 759, 962
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 610, 620
XapI RAATTY 1 cut(s) 1033
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 950
XspI CTAG 3 cut(s) 27, 990, 1107
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.