Rmu_sc0009057.1_g000008

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009057.1
OG0000592
Physical Location & Seq
Forward (+)
27780 .. 28538
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009057.1_g000008.1.cds

Sequence Viewer

Length: 759 bp
atgggacagaagctgccacaagcagctgcagttgtcgtcaactctttcgaaacaatggatgtggaagttactaaggaactgaagaaaagactccaaaagttggtccttgttggtccactacatcttgtcatgccagtacaatcaattgtatcaaatgatgaggaggagaaggatggctgtttacagtggttggacaagcacgagcctgcttcggtagcatacgtcagctttggaactatggtggcactgcctcccatggaggtagcagcattagctgaggcattagaggaaggcggattcccctttctttggtcatttaggggaaatcaagaggactttccacaaggatttatcgaaagaaccaacaggttatccataggaaaagtagttccatgggtgaaccaagagaaaatcctcaatcatacctcggtaggagtgcatgtaacacactgcggttggaactcaattttggagagtgtaactagtggtgtgcctatgattgggaggccttactttgttgatcaaaatttaaatatgcggagtgtagaagttgtatggaagatcggtgtgaggattgagggaggcgttttcacaaaaactagagtagtcaaggccttggaacaagttttatcgcttgaacaaggaaaagaaatgagacagagaattggaatccttaaacagcttgctcaagaggctattggactgaatggacgttcgactcaagacttgaaagctttgatagagatcatcaagtcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

252

Amino Acids

28.03

Weight (kDa)

6.24

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 3 cut(s) 294, 453, 538
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 100, 309, 500
AgsI TTSAA 2 cut(s) 638, 730
AhlI ACTAGT 1 cut(s) 482
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 13, 26, 228, 275, 682, 734
AluI AGCT 6 cut(s) 13, 26, 228, 275, 682, 734
Alw26I GTCTC 1 cut(s) 649
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 2 cut(s) 506, 612
ApeKI GCWGC 4 cut(s) 13, 23, 26, 266
ApoI RAATTY 1 cut(s) 526
AspS9I GGNCC 2 cut(s) 103, 113
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 2 cut(s) 103, 113
BauI CACGAG 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 13, 35, 278
BccI CCATC 1 cut(s) 167
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 649
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 2 cut(s) 483, 600
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 4 cut(s) 14, 24, 27, 267
BlsI GCNGC 4 cut(s) 15, 25, 28, 268
Bme18I GGWCC 2 cut(s) 103, 113
BmgT120I GGNCC 2 cut(s) 103, 113
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 672, 705
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 255, 392, 426, 615
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 309, 500
Bse1I ACTGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 743
BseDI CCNNGG 4 cut(s) 255, 392, 426, 615
BseGI GGATG 2 cut(s) 64, 178
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 3 cut(s) 100, 309, 500
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 176, 179
BseXI GCAGC 3 cut(s) 13, 35, 278
BshFI GGCC 2 cut(s) 508, 614
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 100, 309, 500
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 508, 614
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 3 cut(s) 520, 561, 744
Bsp19I CCATGG 2 cut(s) 255, 392
BspACI CCGC 3 cut(s) 294, 453, 538
BspANI GGCC 2 cut(s) 508, 614
BspCNI CTCAG 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 255, 392, 426, 615
BssMI GATC 3 cut(s) 520, 561, 744
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 3 cut(s) 255, 392, 615
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 207, 684
BstDEI CTNAG 2 cut(s) 72, 276
BstDSI CCRYGG 2 cut(s) 255, 392
BstF5I GGATG 2 cut(s) 64, 178
BstKTI GATC 3 cut(s) 523, 564, 747
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 3 cut(s) 520, 561, 744
BstMWI GCNNNNNNNGC 3 cut(s) 215, 272, 692
BstNSI RCATGY 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 13, 35, 278
BsuRI GGCC 2 cut(s) 508, 614
BtgI CCRYGG 2 cut(s) 255, 392
BtsCI GGATG 2 cut(s) 64, 178
BtsI GCAGTG 2 cut(s) 245, 448
BtsIMutI CAGTG 3 cut(s) 191, 245, 448
Cac8I GCNNGC 2 cut(s) 207, 684
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 103, 113
Csp6I GTAC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 4 cut(s) 130, 256, 393, 440
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 72, 276
DpnI GATC 3 cut(s) 522, 563, 746
DpnII GATC 3 cut(s) 520, 561, 744
DraI TTTAAA 1 cut(s) 531
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 3 cut(s) 255, 392, 615
Eco147I AGGCCT 2 cut(s) 508, 614
Eco47I GGWCC 2 cut(s) 103, 113
Eco57I CTGAAG 1 cut(s) 101
EcoT14I CCWWGG 3 cut(s) 255, 392, 615
ErhI CCWWGG 3 cut(s) 255, 392, 615
FaeI CATG 4 cut(s) 133, 259, 396, 443
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 129, 255, 392, 439
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 14, 24, 27, 267
FokI GGATG 2 cut(s) 71, 185
Fsp4HI GCNGC 4 cut(s) 14, 24, 27, 267
FspBI CTAG 2 cut(s) 483, 600
GluI GCNGC 4 cut(s) 14, 24, 27, 267
HaeIII GGCC 2 cut(s) 508, 614
Hin1II CATG 4 cut(s) 133, 259, 396, 443
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 4 cut(s) 90, 297, 669, 718
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 4 cut(s) 40, 116, 182, 400
Hpy188III TCNNGA 4 cut(s) 329, 689, 722, 756
Hpy8I GTNNAC 4 cut(s) 40, 116, 182, 400
HpyAV CCTTC 2 cut(s) 163, 284
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 222, 712
HpyCH4V TGCA 2 cut(s) 29, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 272, 692
HpyF3I CTNAG 2 cut(s) 72, 276
HpySE526I ACGT 2 cut(s) 222, 712
Hsp92II CATG 4 cut(s) 133, 259, 396, 443
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 520, 561, 744
LpnPI CCDG 3 cut(s) 147, 219, 352
Lsp1109I GCAGC 3 cut(s) 13, 35, 278
MaeI CTAG 2 cut(s) 483, 600
MaeII ACGT 2 cut(s) 222, 712
MaeIII GTNAC 3 cut(s) 67, 442, 478
MalI GATC 3 cut(s) 522, 563, 746
MboI GATC 3 cut(s) 520, 561, 744
MboII GAAGA 2 cut(s) 94, 571
MfeI CAATTG 1 cut(s) 144
MluCI AATT 4 cut(s) 144, 465, 526, 663
MlyI GAGTC 2 cut(s) 84, 712
MmeI TCCRAC 2 cut(s) 171, 437
MseI TTAA 2 cut(s) 530, 675
MspA1I CMGCKG 1 cut(s) 26
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 215, 272, 692
NcoI CCATGG 2 cut(s) 255, 392
NdeII GATC 3 cut(s) 520, 561, 744
NlaIII CATG 4 cut(s) 133, 259, 396, 443
NspI RCATGY 1 cut(s) 443
NspV TTCGAA 1 cut(s) 48
PceI AGGCCT 2 cut(s) 508, 614
PfeI GAWTC 2 cut(s) 297, 669
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 4 cut(s) 15, 25, 28, 268
PleI GAGTC 2 cut(s) 84, 712
PpsI GAGTC 2 cut(s) 84, 712
PspPI GGNCC 2 cut(s) 103, 113
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 530, 675
SatI GCNGC 4 cut(s) 14, 24, 27, 267
Sau3AI GATC 3 cut(s) 520, 561, 744
Sau96I GGNCC 2 cut(s) 103, 113
SchI GAGTC 2 cut(s) 84, 712
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 2 cut(s) 103, 113
SmiI ATTTAAAT 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 687, 720
SmoI CTYRAG 2 cut(s) 687, 720
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 4 cut(s) 144, 465, 526, 663
SseBI AGGCCT 2 cut(s) 508, 614
SsiI CCGC 3 cut(s) 294, 453, 538
SspMI CTAG 2 cut(s) 483, 600
StuI AGGCCT 2 cut(s) 508, 614
StyI CCWWGG 3 cut(s) 255, 392, 615
SwaI ATTTAAAT 1 cut(s) 531
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 225, 715
TaqI TCGA 3 cut(s) 48, 354, 716
TasI AATT 4 cut(s) 144, 465, 526, 663
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 2 cut(s) 297, 669
Tru1I TTAA 2 cut(s) 530, 675
Tru9I TTAA 2 cut(s) 530, 675
TscAI CASTG 3 cut(s) 191, 252, 455
TseI GCWGC 4 cut(s) 13, 23, 26, 266
TspRI CASTG 3 cut(s) 191, 252, 455
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 103, 113
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 443
XspI CTAG 2 cut(s) 483, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.