Rmu_sc0004325.1_g000016

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004325.1
Physical Location & Seq
Forward (+)
95572 .. 97053
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004325.1_g000016.1.cds

Sequence Viewer

Length: 1299 bp
atgagccacaaacttgctagttctaatcctcaagcccctgtggcagttttaaattttccattcgcgtcccatcccagctctcttctccgattcatacgtaccatttcggccgtggccccggacataaagttcaccttcttcagcacttctataacaaatagctccctcttctcgggttccaacacaaagggcttggataatataaagccttacaatgtatgggatggcttgccagagggctacgtgcccccctctggacctccgctggagcaaattggcttgttccttgacaaggcacctcaaagcttcgagagagcactcaaagaagtggaggctgaaacaggacacaagtttggctgcttgatttcagatgcatttctctggttttcaggggacattgccgagagaatgaacgtcccttgggtgagtacatggagtggaccacgcccgctgcttgttcatctggagactgatatgattagagaaaaagtgggagctcctgggcaagaagacaagaccttggacttccttccaggattctcaaatgagttccaagcatctgacttaccaaaggaagttgtatttggaaacatagagtcgccacttgcaaatatgttgcataaaatgggacagaagctgccacaagcaactgcggttgccgtcaactcttttgaaacaatggacttgaaagttgccgaggagctgaagaaaagactcaagaagttgctacttgttggaccgctacatctagtccaggtggtaccgtcagcaaaatcagatgatgatgaggaggagaaggatgtatgcttatcgtggctggacaaccataagcccgcatcagtagcatacatcagctttggaagtgtgggggcactgcccccaatagaggtagcaacattagccaaggcattagaggaagggggattcccatttctttggtcatttaggggaaacctagaggactttcccgaaggattttttgaaagaatatctactggaaaagttgttccctggagtgtaacttgtggtgtgcctatgattgggaggcctcattttgctgatcaaacgctgaatatgcggagcatagaagttgtatggaagatcggtatgagaattgagggtggcgttttcactaaatctggagcaatcaaggtattggaacaggctctatcgcttgagcaaggaaaagaaatgagacacagagttggagtccttaaacagcttgctcaagaggctgttggacccaatgggagttcagctcaagacttgaaagctctggtggagatcatcaaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

432

Amino Acids

47.33

Weight (kDa)

5.7

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 295, 760
AccII CGCG 1 cut(s) 65
AciI CCGC 6 cut(s) 263, 449, 653, 740, 834, 1078
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 124, 725
AfaI GTAC 3 cut(s) 100, 430, 762
AfiI CCNNNNNNNGG 5 cut(s) 172, 254, 292, 886, 1040
AgsI TTSAA 4 cut(s) 674, 688, 983, 1270
AjnI CCWGG 4 cut(s) 499, 532, 753, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AloI GAACNNNNNNTCC 4 cut(s) 113, 145, 990, 1022
Alw21I GWGCWC 2 cut(s) 319, 499
Alw26I GTCTC 2 cut(s) 461, 1189
AlwNI CAGNNNCTG 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 3 cut(s) 108, 114, 1046
ApeKI GCWGC 3 cut(s) 357, 451, 637
ApoI RAATTY 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 760
AspS9I GGNCC 5 cut(s) 115, 257, 440, 737, 1241
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 124, 436
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 4 cut(s) 257, 440, 737, 1241
BaeGI GKGCMC 2 cut(s) 249, 874
BanI GGYRCC 2 cut(s) 295, 760
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 319, 499
BbvI GCAGC 3 cut(s) 344, 438, 624
BccI CCATC 2 cut(s) 78, 218
BceAI ACGGC 2 cut(s) 95, 644
BciT130I CCWGG 4 cut(s) 501, 534, 755, 1012
BclI TGATCA 1 cut(s) 1060
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 461, 1189
BfaI CTAG 3 cut(s) 18, 749, 956
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 3 cut(s) 358, 452, 638
BlsI GCNGC 3 cut(s) 359, 453, 639
Bme1390I CCNGG 5 cut(s) 119, 501, 534, 755, 1012
Bme18I GGWCC 4 cut(s) 257, 440, 737, 1241
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 5 cut(s) 115, 257, 440, 737, 1241
BmiI GGNNCC 5 cut(s) 117, 178, 297, 762, 1243
BmrFI CCNGG 5 cut(s) 119, 501, 534, 755, 1012
BmsI GCATC 3 cut(s) 361, 566, 845
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 1243, 1275
BpmI CTGGAG 4 cut(s) 287, 485, 1033, 1161
BpuEI CTTGAG 5 cut(s) 15, 701, 1196, 1212, 1245
BpuMI CCSGG 1 cut(s) 119
BsaAI YACGTR 2 cut(s) 98, 244
BsaJI CCNNGG 8 cut(s) 111, 117, 419, 500, 519, 696, 903, 1010
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 254, 292, 886, 1040
Bse1I ACTGG 1 cut(s) 1000
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 4 cut(s) 501, 534, 755, 1012
BseDI CCNNGG 8 cut(s) 111, 117, 419, 500, 519, 696, 903, 1010
BseGI GGATG 3 cut(s) 70, 229, 805
BseLI CCNNNNNNNGG 5 cut(s) 172, 254, 292, 886, 1040
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 1000
BseRI GAGGAG 3 cut(s) 713, 803, 806
BseSI GKGCMC 2 cut(s) 249, 874
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 344, 438, 624
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 110, 116, 1048
BshNI GGYRCC 2 cut(s) 295, 760
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 319, 499
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 4 cut(s) 52, 401, 407, 642
BslI CCNNNNNNNGG 5 cut(s) 172, 254, 292, 886, 1040
BsmAI GTCTC 2 cut(s) 461, 1189
BsmFI GGGAC 4 cut(s) 52, 401, 407, 642
BsnI GGCC 3 cut(s) 110, 116, 1048
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 4 cut(s) 249, 319, 499, 874
Bsp143I GATC 3 cut(s) 1060, 1101, 1284
BspACI CCGC 6 cut(s) 263, 449, 653, 740, 834, 1078
BspANI GGCC 3 cut(s) 110, 116, 1048
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 1295
BspLI GGNNCC 5 cut(s) 117, 178, 297, 762, 1243
BspT107I GGYRCC 2 cut(s) 295, 760
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 1000
BssECI CCNNGG 8 cut(s) 111, 117, 419, 500, 519, 696, 903, 1010
BssMI GATC 3 cut(s) 1060, 1101, 1284
BssT1I CCWWGG 3 cut(s) 419, 519, 903
Bst2UI CCWGG 4 cut(s) 501, 534, 755, 1012
Bst4CI ACNGT 1 cut(s) 765
Bst6I CTCTTC 2 cut(s) 87, 173
BstBAI YACGTR 2 cut(s) 98, 244
BstC8I GCNNGC 4 cut(s) 230, 449, 834, 1224
BstDSI CCRYGG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 70, 229, 805
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 1063, 1104, 1287
BstMAI GTCTC 2 cut(s) 461, 1189
BstMBI GATC 3 cut(s) 1060, 1101, 1284
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1075, 1232
BstNI CCWGG 4 cut(s) 501, 534, 755, 1012
BstSCI CCNGG 5 cut(s) 117, 499, 532, 753, 1010
BstSLI GKGCMC 2 cut(s) 249, 874
BstSNI TACGTA 1 cut(s) 98
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 344, 438, 624
BstV2I GAAGAC 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 110, 116, 1048
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 3 cut(s) 70, 229, 805
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 1 cut(s) 872
Cac8I GCNNGC 4 cut(s) 230, 449, 834, 1224
CaiI CAGNNNCTG 1 cut(s) 637
CciI TCATGA 1 cut(s) 1295
Cfr13I GGNCC 5 cut(s) 115, 257, 440, 737, 1241
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 99, 429, 761
CviAII CATG 2 cut(s) 432, 1296
CviQI GTAC 3 cut(s) 99, 429, 761
DpnI GATC 3 cut(s) 1062, 1103, 1286
DpnII GATC 3 cut(s) 1060, 1101, 1284
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 87, 173
EarI CTCTTC 2 cut(s) 87, 173
Ecl136II GAGCTC 1 cut(s) 497
EclXI CGGCCG 1 cut(s) 108
Eco105I TACGTA 1 cut(s) 98
Eco130I CCWWGG 3 cut(s) 419, 519, 903
Eco147I AGGCCT 1 cut(s) 1048
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 4 cut(s) 257, 440, 737, 1241
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 2 cut(s) 124, 725
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 4 cut(s) 499, 532, 753, 1010
EcoT14I CCWWGG 3 cut(s) 419, 519, 903
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 3 cut(s) 419, 519, 903
FaeI CATG 2 cut(s) 435, 1299
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 4 cut(s) 52, 401, 407, 642
FatI CATG 2 cut(s) 431, 1295
FauI CCCGC 2 cut(s) 456, 841
FbaI TGATCA 1 cut(s) 1060
Fnu4HI GCNGC 3 cut(s) 358, 452, 638
FokI GGATG 3 cut(s) 57, 236, 812
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 358, 452, 638
FspBI CTAG 3 cut(s) 18, 749, 956
GluI GCNGC 3 cut(s) 358, 452, 638
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 4 cut(s) 287, 485, 1033, 1161
HaeIII GGCC 3 cut(s) 110, 116, 1048
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 435, 1299
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 6 cut(s) 90, 537, 596, 714, 924, 1209
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 124, 436
Hpy166II GTNNAC 3 cut(s) 132, 440, 664
Hpy188I TCNGA 4 cut(s) 89, 370, 562, 778
Hpy188III TCNNGA 9 cut(s) 255, 310, 464, 718, 968, 1140, 1229, 1262, 1296
Hpy8I GTNNAC 3 cut(s) 132, 440, 664
HpyAV CCTTC 5 cut(s) 145, 539, 790, 911, 965
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4IV ACGT 3 cut(s) 97, 243, 414
HpyCH4V TGCA 3 cut(s) 374, 608, 619
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1075, 1232
HpySE526I ACGT 3 cut(s) 97, 243, 414
Hsp92II CATG 2 cut(s) 435, 1299
KpnI GGTACC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 1060
Kzo9I GATC 3 cut(s) 1060, 1101, 1284
LmnI GCTCC 7 cut(s) 167, 268, 494, 502, 700, 1080, 1142
Lsp1109I GCAGC 3 cut(s) 344, 438, 624
LweI GCATC 3 cut(s) 361, 566, 845
MaeI CTAG 3 cut(s) 18, 749, 956
MaeII ACGT 3 cut(s) 97, 243, 414
MaeIII GTNAC 1 cut(s) 1018
MalI GATC 3 cut(s) 1062, 1103, 1286
MboI GATC 3 cut(s) 1060, 1101, 1284
MboII GAAGA 6 cut(s) 74, 130, 160, 521, 718, 1111
MhlI GDGCHC 4 cut(s) 249, 319, 499, 874
MluCI AATT 3 cut(s) 52, 273, 1113
MlyI GAGTC 3 cut(s) 605, 708, 1218
MmeI TCCRAC 4 cut(s) 204, 715, 1186, 1219
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 50, 1215
MspA1I CMGCKG 2 cut(s) 265, 451
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 5 cut(s) 119, 501, 534, 755, 1012
MvaI CCWGG 4 cut(s) 501, 534, 755, 1012
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1075, 1232
NciI CCSGG 1 cut(s) 119
NdeII GATC 3 cut(s) 1060, 1101, 1284
NlaIII CATG 2 cut(s) 435, 1299
NlaIV GGNNCC 5 cut(s) 117, 178, 297, 762, 1243
NmeAIII GCCGAG 2 cut(s) 427, 721
NsiI ATGCAT 1 cut(s) 376
PagI TCATGA 1 cut(s) 1295
PceI AGGCCT 1 cut(s) 1048
PfeI GAWTC 3 cut(s) 90, 537, 924
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 3 cut(s) 359, 453, 639
PleI GAGTC 3 cut(s) 604, 708, 1217
PpsI GAGTC 3 cut(s) 604, 708, 1217
Ppu21I YACGTR 2 cut(s) 98, 244
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 4 cut(s) 499, 532, 753, 1010
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 4 cut(s) 499, 532, 753, 1010
PspN4I GGNNCC 5 cut(s) 117, 178, 297, 762, 1243
PspPI GGNCC 5 cut(s) 115, 257, 440, 737, 1241
PstNI CAGNNNCTG 1 cut(s) 637
RsaI GTAC 3 cut(s) 100, 430, 762
RsaNI GTAC 3 cut(s) 99, 429, 761
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 50, 1215
SatI GCNGC 3 cut(s) 358, 452, 638
Sau3AI GATC 3 cut(s) 1060, 1101, 1284
Sau96I GGNCC 5 cut(s) 115, 257, 440, 737, 1241
SchI GAGTC 3 cut(s) 605, 708, 1218
ScrFI CCNGG 5 cut(s) 119, 501, 534, 755, 1012
SduI GDGCHC 4 cut(s) 249, 319, 499, 874
SfaNI GCATC 3 cut(s) 361, 566, 845
SinI GGWCC 4 cut(s) 257, 440, 737, 1241
SmlI CTYRAG 5 cut(s) 30, 716, 1175, 1227, 1260
SmoI CTYRAG 5 cut(s) 30, 716, 1175, 1227, 1260
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 3 cut(s) 52, 273, 1113
SseBI AGGCCT 1 cut(s) 1048
SsiI CCGC 6 cut(s) 263, 449, 653, 740, 834, 1078
SspMI CTAG 3 cut(s) 18, 749, 956
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 1048
StyD4I CCNGG 5 cut(s) 117, 499, 532, 753, 1010
StyI CCWWGG 3 cut(s) 419, 519, 903
TaaI ACNGT 1 cut(s) 765
TaiI ACGT 3 cut(s) 100, 246, 417
TaqI TCGA 1 cut(s) 309
TasI AATT 3 cut(s) 52, 273, 1113
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 3 cut(s) 90, 537, 924
Tru1I TTAA 2 cut(s) 50, 1215
Tru9I TTAA 2 cut(s) 50, 1215
TscAI CASTG 1 cut(s) 879
TseI GCWGC 3 cut(s) 357, 451, 637
TspDTI ATGAA 3 cut(s) 82, 425, 449
TspRI CASTG 1 cut(s) 879
VpaK11BI GGWCC 4 cut(s) 257, 440, 737, 1241
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 3 cut(s) 18, 749, 956
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.