Rh4AG046100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000592
Physical Location & Seq
Reverse (-)
9648173 .. 9653647
5475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG046100.1

Sequence Viewer

Length: 975 bp
ATGAGCCACAAAGTTGCTAGTACTAGTCCTCGAAATGTTGCCGTCTTAGTTTTTCCATTCACCTCCCATCCCACCGCTCTTCTTCGATTTGTACGTTCCCTTTCAACTGTTGCCCCGGATATGCAGTTCACCTTCTTCAACATTTCTAGATCAAATAGCTCCCTCTTCTCAGGTTCCGGCAACAAGGGCTGTGATAATATAAAGCCTTACAACGTATGGGATGGCTTACCAGATGGTTACATACCTCTCTCCAGAAATCCACAACGGGAGCACGTTGAGTTGTTTATTGACAATGCACCTCGGATCTTCGAGAGGGCAATCAAAGAGGTGGAGGCTGAAACAGGACACAAGTTTGGCTGCTTGATTTCGGATGCATTATTCTGGTTTGCTGCAGACATAGCCGAGAAAATGCACGTCCCTTGGGTGACCTCATGGATTGGTGATATACGCTCACTTTTTGTTCATATCGAGACTGATATAATTAGAGATAAAGTAGGAGCTCCAGGACAAGAAAACAAAACCCTGGAATTCCTTTCGGGATTCTCCGATGAGTTTCAAGCATCTGACTTACCCAAGGAGATTGTATTTGGAGAAATAGAATCGCCATTTGCAAGAATGTTGCATAAAATGGGACAGAAGCTGCCAGAAGCAGCTGCAGTTGCCGTCAACTCTTTTGAAACAATGGACTTGAAAGTTACTGAGGAACTGAAGAAAAGACTCCAAAAGTTGATCCTTGTTGGTCCACTACATCTTGTCCGGCCACTACAATCAGTAGTATCAGATGATGAGGATCAGCAGCAGGAGGAGGATGTATGCTTACAATGGCTGGACGACCACAAGCCTGCGTCGGTAGCATACATCAGCTTTGGAAGTCTGGGGGCACTACCCCCCATGGAGGTAGTAGCATTAGCTGAAGCTTTAGAGCAAGGGCCAGCCCTGAGGGTGCAGCCTGAGGCGGCCATCGACCTCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

324

Amino Acids

36.05

Weight (kDa)

5.04

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 2 cut(s) 75, 956
AclWI GGATC 3 cut(s) 311, 724, 798
AcoI YGGCCR 2 cut(s) 758, 957
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 728, 933
AfaI GTAC 2 cut(s) 22, 93
AfiI CCNNNNNNNGG 1 cut(s) 895
AgsI TTSAA 5 cut(s) 105, 139, 557, 677, 691
AhlI ACTAGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 502, 522
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 159, 500, 640, 653, 864, 911, 917
AluI AGCT 7 cut(s) 159, 500, 640, 653, 864, 911, 917
Alw21I GWGCWC 2 cut(s) 273, 502
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 3 cut(s) 311, 724, 798
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 3 cut(s) 758, 929, 957
ApeKI GCWGC 7 cut(s) 357, 389, 640, 650, 653, 796, 946
ApoI RAATTY 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 740, 929
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 52, 121, 436, 452
AvaII GGWCC 1 cut(s) 740
AxyI CCTNAGG 2 cut(s) 938, 951
BaeGI GKGCMC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 502
Bbv12I GWGCWC 2 cut(s) 273, 502
BbvI GCAGC 7 cut(s) 344, 376, 627, 640, 662, 808, 958
BccI CCATC 4 cut(s) 75, 215, 227, 968
BceAI ACGGC 2 cut(s) 26, 647
BciT130I CCWGG 2 cut(s) 504, 524
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 3 cut(s) 18, 24, 147
BfmI CTRYAG 2 cut(s) 390, 654
BisI GCNGC 8 cut(s) 358, 390, 641, 651, 654, 797, 947, 957
BlsI GCNGC 8 cut(s) 359, 391, 642, 652, 655, 798, 948, 958
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 3 cut(s) 116, 504, 524
Bme18I GGWCC 1 cut(s) 740
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 740, 929
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 3 cut(s) 116, 504, 524
BmsI GCATC 2 cut(s) 361, 569
BpmI CTGGAG 2 cut(s) 235, 486
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 6 cut(s) 114, 299, 419, 522, 573, 891
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse21I CCTNAGG 2 cut(s) 938, 951
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 2 cut(s) 504, 524
BseDI CCNNGG 6 cut(s) 114, 299, 419, 522, 573, 891
BseGI GGATG 4 cut(s) 67, 226, 376, 814
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMII CTCAG 4 cut(s) 183, 690, 929, 942
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 7 cut(s) 344, 376, 627, 640, 662, 808, 958
BsgI GTGCAG 1 cut(s) 965
BshFI GGCC 3 cut(s) 760, 931, 959
BsiHKAI GWGCWC 2 cut(s) 273, 502
BsiSI CCGG 3 cut(s) 116, 177, 757
BslFI GGGAC 2 cut(s) 401, 645
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 401, 645
BsnI GGCC 3 cut(s) 760, 931, 959
Bsp1286I GDGCHC 3 cut(s) 273, 502, 883
Bsp143I GATC 4 cut(s) 149, 303, 729, 790
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 2 cut(s) 75, 956
BspANI GGCC 3 cut(s) 760, 931, 959
BspCNI CTCAG 4 cut(s) 182, 691, 930, 943
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 2 cut(s) 394, 658
BspPI GGATC 3 cut(s) 311, 724, 798
BspQI GCTCTTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 77
BssECI CCNNGG 6 cut(s) 114, 299, 419, 522, 573, 891
BssMI GATC 4 cut(s) 149, 303, 729, 790
BssT1I CCWWGG 3 cut(s) 419, 573, 891
Bst2UI CCWGG 2 cut(s) 504, 524
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 84, 170
BstC8I GCNNGC 2 cut(s) 843, 933
BstDEI CTNAG 5 cut(s) 46, 169, 699, 938, 951
BstDSI CCRYGG 1 cut(s) 891
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 4 cut(s) 67, 226, 376, 814
BstKTI GATC 4 cut(s) 152, 306, 732, 793
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 4 cut(s) 149, 303, 729, 790
BstMWI GCNNNNNNNGC 4 cut(s) 186, 398, 659, 851
BstNI CCWGG 2 cut(s) 504, 524
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 114, 502, 522
BstSFI CTRYAG 2 cut(s) 390, 654
BstSLI GKGCMC 1 cut(s) 883
BstV1I GCAGC 7 cut(s) 344, 376, 627, 640, 662, 808, 958
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
Bsu36I CCTNAGG 2 cut(s) 938, 951
BsuRI GGCC 3 cut(s) 760, 931, 959
BtgI CCRYGG 1 cut(s) 891
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 4 cut(s) 67, 226, 376, 814
Cac8I GCNNGC 2 cut(s) 843, 933
CaiI CAGNNNCTG 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 740, 929
CseI GACGC 1 cut(s) 834
Csp6I GTAC 2 cut(s) 21, 92
CviAII CATG 2 cut(s) 432, 892
CviQI GTAC 2 cut(s) 21, 92
DdeI CTNAG 5 cut(s) 46, 169, 699, 938, 951
DpnI GATC 4 cut(s) 151, 305, 731, 792
DpnII GATC 4 cut(s) 149, 303, 729, 790
EaeI YGGCCR 2 cut(s) 758, 957
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
Ecl136II GAGCTC 1 cut(s) 500
Eco130I CCWWGG 3 cut(s) 419, 573, 891
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 728, 933
Eco81I CCTNAGG 2 cut(s) 938, 951
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 502, 522
EcoT14I CCWWGG 3 cut(s) 419, 573, 891
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 419, 573, 891
FaeI CATG 2 cut(s) 435, 895
FaqI GGGAC 2 cut(s) 401, 645
FatI CATG 2 cut(s) 431, 891
Fnu4HI GCNGC 8 cut(s) 358, 390, 641, 651, 654, 797, 947, 957
FokI GGATG 4 cut(s) 54, 233, 383, 821
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 8 cut(s) 358, 390, 641, 651, 654, 797, 947, 957
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 8 cut(s) 358, 390, 641, 651, 654, 797, 947, 957
GsuI CTGGAG 2 cut(s) 235, 486
HaeIII GGCC 3 cut(s) 760, 931, 959
HapII CCGG 3 cut(s) 116, 177, 757
HgaI GACGC 1 cut(s) 834
Hin1II CATG 2 cut(s) 435, 895
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 3 cut(s) 540, 599, 717
HpaII CCGG 3 cut(s) 116, 177, 757
HphI GGTGA 4 cut(s) 52, 121, 436, 452
Hpy166II GTNNAC 3 cut(s) 129, 667, 743
Hpy188I TCNGA 5 cut(s) 303, 370, 547, 565, 781
Hpy188III TCNNGA 5 cut(s) 147, 252, 310, 469, 537
Hpy8I GTNNAC 3 cut(s) 129, 667, 743
Hpy99I CGWCG 1 cut(s) 850
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 4 cut(s) 94, 213, 273, 414
HpyCH4V TGCA 9 cut(s) 124, 296, 374, 392, 412, 611, 622, 656, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 398, 659, 851
HpyF3I CTNAG 5 cut(s) 46, 169, 699, 938, 951
HpySE526I ACGT 4 cut(s) 94, 213, 273, 414
Hsp92II CATG 2 cut(s) 435, 895
Kzo9I GATC 4 cut(s) 149, 303, 729, 790
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 4 cut(s) 164, 268, 497, 505
Lsp1109I GCAGC 7 cut(s) 344, 376, 627, 640, 662, 808, 958
LweI GCATC 2 cut(s) 361, 569
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 273, 414
MaeIII GTNAC 3 cut(s) 236, 424, 694
MalI GATC 4 cut(s) 151, 305, 731, 792
MbiI CCGCTC 1 cut(s) 77
MboI GATC 4 cut(s) 149, 303, 729, 790
MboII GAAGA 6 cut(s) 71, 74, 127, 157, 298, 721
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 3 cut(s) 273, 502, 883
MluCI AATT 2 cut(s) 480, 527
MlyI GAGTC 1 cut(s) 711
Mph1103I ATGCAT 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 116, 177, 757
MspR9I CCNGG 3 cut(s) 116, 504, 524
MvaI CCWGG 2 cut(s) 504, 524
MwoI GCNNNNNNNGC 4 cut(s) 186, 398, 659, 851
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 891
NdeII GATC 4 cut(s) 149, 303, 729, 790
NlaIII CATG 2 cut(s) 435, 895
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 2 cut(s) 540, 599
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 8 cut(s) 359, 391, 642, 652, 655, 798, 948, 958
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 502, 522
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 502, 522
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 740, 929
PstI CTGCAG 2 cut(s) 394, 658
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 22, 93
RsaNI GTAC 2 cut(s) 21, 92
SacI GAGCTC 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 84
SatI GCNGC 8 cut(s) 358, 390, 641, 651, 654, 797, 947, 957
Sau3AI GATC 4 cut(s) 149, 303, 729, 790
Sau96I GGNCC 2 cut(s) 740, 929
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 711
ScrFI CCNGG 3 cut(s) 116, 504, 524
SduI GDGCHC 3 cut(s) 273, 502, 883
SfaNI GCATC 2 cut(s) 361, 569
SfcI CTRYAG 2 cut(s) 390, 654
SinI GGWCC 1 cut(s) 740
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 2 cut(s) 480, 527
SsiI CCGC 2 cut(s) 75, 956
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 3 cut(s) 114, 502, 522
StyI CCWWGG 3 cut(s) 419, 573, 891
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 4 cut(s) 97, 216, 276, 417
TaqI TCGA 5 cut(s) 31, 85, 309, 468, 963
TasI AATT 2 cut(s) 480, 527
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 2 cut(s) 540, 599
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 7 cut(s) 357, 389, 640, 650, 653, 796, 946
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 1 cut(s) 527
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 3 cut(s) 18, 24, 147
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.