Rorug04G0002400

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000592
Physical Location & Seq
Forward (+)
463372 .. 463986
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0002400.1

Sequence Viewer

Length: 615 bp
ATGTCCTTGCTTAAACCTTGGCCCAGTGTTGTTCATCTCTATGCTAATCCTCAGTCTGATAAGATTACTATGGTTAATTTGCACTACGAAACCATTCTGGATACCTGTTTCTATTGTGGTAGGGTTGAACATGCTCATCCTGACCATGTAGAAGACTGTCCATTTGTTATGATGGACAAGTTCCCTGAAGAGCAGAAAATGTACCCAGCTGCTACCACTTATGATGAGATGAGGTTTGGCCCTGTGCCGGATGAGGTTATGCTTGTGTTCTCTAAAGCTCGGATTATGACTCATCAACAAGTTGTTGTTGCTGTTGCTGCTAACTTTCCTCTGCGTTTGCCTGTTCATGCTCCAAATTGGGGCTATAAAATGGATTCTCAGCAGCCCTCTTATGGATGGCAAACTGTCCACCGTCGCTCTCGCCGTTCTCAGGCCAAGCCTCAGTCCAACTGGTTTCATACTCCTGAAGGTCTTGTCCGTGATCATACTGTCTATCCTGAAGCTAGTGCTGGGACTTCTGACATTGTTTCTCCTTTTTGCCGGGGCCTCAACATGCAAGCTGACCTAAGGAGCCATGATTCATATGGGACCTTTTCACAAGGTTCCCTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

204

Amino Acids

23.34

Weight (kDa)

6.39

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 207, 486, 519
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 4 cut(s) 247, 359, 392, 430
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 4 cut(s) 209, 278, 503, 560
AluI AGCT 4 cut(s) 209, 278, 503, 560
AoxI GGCC 4 cut(s) 20, 238, 432, 544
ApeKI GCWGC 3 cut(s) 209, 317, 382
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 4 cut(s) 21, 239, 544, 588
AsuC2I CCSGG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 588
AxyI CCTNAGG 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 196, 304, 394
BccI CCATC 2 cut(s) 166, 390
BceAI ACGGC 1 cut(s) 408
BciVI GTATCC 1 cut(s) 94
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 542
BfaI CTAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 3 cut(s) 210, 318, 383
BlsI GCNGC 3 cut(s) 211, 319, 384
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 4 cut(s) 21, 239, 544, 588
BmiI GGNNCC 4 cut(s) 545, 572, 589, 604
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 17, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 359, 392, 430
Bse1I ACTGG 2 cut(s) 24, 455
Bse21I CCTNAGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 17, 541
BseGI GGATG 3 cut(s) 136, 256, 401
BseLI CCNNNNNNNGG 4 cut(s) 247, 359, 392, 430
BseMII CTCAG 4 cut(s) 65, 392, 443, 455
BseNI ACTGG 2 cut(s) 24, 455
BseXI GCAGC 3 cut(s) 196, 304, 394
BseYI CCCAGC 2 cut(s) 205, 509
BshFI GGCC 4 cut(s) 22, 240, 434, 546
BsiSI CCGG 2 cut(s) 248, 541
BslFI GGGAC 2 cut(s) 526, 601
BslI CCNNNNNNNGG 4 cut(s) 247, 359, 392, 430
BsmFI GGGAC 2 cut(s) 526, 601
BsnI GGCC 4 cut(s) 22, 240, 434, 546
Bsp143I GATC 1 cut(s) 481
BspANI GGCC 4 cut(s) 22, 240, 434, 546
BspCNI CTCAG 4 cut(s) 64, 391, 442, 454
BspLI GGNNCC 4 cut(s) 545, 572, 589, 604
BspQI GCTCTTC 1 cut(s) 183
BsrI ACTGG 2 cut(s) 24, 455
BssECI CCNNGG 2 cut(s) 17, 541
BssMI GATC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 4 cut(s) 158, 406, 413, 490
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 5 cut(s) 51, 378, 429, 441, 566
BstF5I GGATG 3 cut(s) 136, 256, 401
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 134, 556
BstSCI CCNGG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 196, 304, 394
BstV2I GAAGAC 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 4 cut(s) 22, 240, 434, 546
BtsCI GGATG 3 cut(s) 136, 256, 401
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 558
Cfr13I GGNCC 4 cut(s) 21, 239, 544, 588
Csp6I GTAC 1 cut(s) 202
CviAII CATG 5 cut(s) 131, 146, 347, 553, 575
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 5 cut(s) 51, 378, 429, 441, 566
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 588
Eco57I CTGAAG 3 cut(s) 207, 486, 519
Eco81I CCTNAGG 1 cut(s) 566
EcoO109I RGGNCCY 2 cut(s) 544, 588
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 5 cut(s) 134, 149, 350, 556, 578
FalI AAGNNNNNCTT 1 cut(s) 591
FaqI GGGAC 2 cut(s) 526, 601
FatI CATG 5 cut(s) 130, 145, 346, 552, 574
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 210, 318, 383
FokI GGATG 3 cut(s) 123, 263, 408
Fsp4HI GCNGC 3 cut(s) 210, 318, 383
FspBI CTAG 1 cut(s) 504
GluI GCNGC 3 cut(s) 210, 318, 383
GsaI CCCAGC 2 cut(s) 209, 513
HaeIII GGCC 4 cut(s) 22, 240, 434, 546
HapII CCGG 2 cut(s) 248, 541
Hin1II CATG 5 cut(s) 134, 149, 350, 556, 578
HinfI GANTC 3 cut(s) 289, 374, 578
HpaII CCGG 2 cut(s) 248, 541
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 58, 282, 520
Hpy188III TCNNGA 4 cut(s) 98, 140, 464, 497
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 4 cut(s) 158, 406, 413, 490
HpyCH4V TGCA 2 cut(s) 82, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 5 cut(s) 51, 378, 429, 441, 566
Hsp92II CATG 5 cut(s) 134, 149, 350, 556, 578
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 1 cut(s) 481
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 355, 570
Lsp1109I GCAGC 3 cut(s) 196, 304, 394
MaeI CTAG 1 cut(s) 504
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 2 cut(s) 164, 200
MluCI AATT 2 cut(s) 76, 355
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 7 cut(s) 60, 225, 247, 339, 397, 450, 557
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 12, 75
MslI CAYNNNNRTG 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 248, 541
MspR9I CCNGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 542
NdeI CATATG 1 cut(s) 583
NdeII GATC 1 cut(s) 481
NlaIII CATG 5 cut(s) 134, 149, 350, 556, 578
NlaIV GGNNCC 4 cut(s) 545, 572, 589, 604
NspI RCATGY 2 cut(s) 134, 556
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 374, 578
PkrI GCNGC 3 cut(s) 211, 319, 384
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 588
PspFI CCCAGC 2 cut(s) 205, 509
PspN4I GGNNCC 4 cut(s) 545, 572, 589, 604
PspPI GGNCC 4 cut(s) 21, 239, 544, 588
PspPPI RGGWCCY 1 cut(s) 588
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 12, 75
SatI GCNGC 3 cut(s) 210, 318, 383
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 4 cut(s) 21, 239, 544, 588
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 542
SinI GGWCC 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 76, 355
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 4 cut(s) 158, 406, 413, 490
TasI AATT 2 cut(s) 76, 355
TfiI GAWTC 2 cut(s) 374, 578
Tru1I TTAA 2 cut(s) 12, 75
Tru9I TTAA 2 cut(s) 12, 75
TscAI CASTG 1 cut(s) 31
TseI GCWGC 3 cut(s) 209, 317, 382
TspDTI ATGAA 4 cut(s) 23, 335, 446, 570
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 588
XceI RCATGY 2 cut(s) 134, 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.