Rmu_sc0008186.1_g000005

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008186.1
OG0000592
Physical Location & Seq
Reverse (-)
13760 .. 14257
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008186.1_g000005.1.cds

Sequence Viewer

Length: 498 bp
atgggacagaagctgccacaagcaactgcggttgccgacaactcttttgaaacaatggacttgaaagtttccgaggagctgaagaaaagactcaagaagttgctccttgttgggccgctacatctagttcggtcggtaccgtcaacacaatcagatgatgacgaggaggagaaggatgtatgcttaccatggctggacaaccacaagcatgcattagtatcatacatcagctttggaagtgtgggggcactgcctctaatggaggtagcagcattagctaaggcattagaatttctttggtcatttagggaaaacctagaggacttcccaaaggatttatcgaaagaacatcactggaaaagttgttccctaggtgaaccaagtgcaaatcctaaatcatccgtctataggggtgtttgttacacatggcggttggaaatcagttttggagagtgtaacttgtggtgtgcctatgattgggaggcctcattttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

5.23

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 3 cut(s) 29, 116, 430
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 408, 477
AgsI TTSAA 2 cut(s) 50, 64
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AloI GAACNNNNNNTCC 2 cut(s) 349, 381
AluBI AGCT 4 cut(s) 13, 79, 231, 278
AluI AGCT 4 cut(s) 13, 79, 231, 278
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 2 cut(s) 113, 483
ApeKI GCWGC 2 cut(s) 13, 269
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
Asp718I GGTACC 1 cut(s) 136
AspA2I CCTAGG 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 386
AvrII CCTAGG 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 281
BfaI CTAG 3 cut(s) 125, 317, 371
BfmI CTRYAG 1 cut(s) 406
BisI GCNGC 3 cut(s) 14, 116, 270
BlnI CCTAGG 1 cut(s) 370
BlsI GCNGC 3 cut(s) 15, 117, 271
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 72, 188, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 477
Bse1I ACTGG 1 cut(s) 359
BseDI CCNNGG 3 cut(s) 72, 188, 370
BseGI GGATG 2 cut(s) 181, 398
BseLI CCNNNNNNNGG 2 cut(s) 408, 477
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 3 cut(s) 89, 179, 182
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 115, 485
BshNI GGYRCC 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 408, 477
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 115, 485
Bsp1286I GDGCHC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 3 cut(s) 29, 116, 430
BspANI GGCC 2 cut(s) 115, 485
BspLI GGNNCC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 72, 188, 370
BssT1I CCWWGG 2 cut(s) 188, 370
Bst4CI ACNGT 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 181, 398
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 281
BsuRI GGCC 2 cut(s) 115, 485
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 181, 398
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 248, 352
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 137
CviAII CATG 3 cut(s) 189, 209, 426
CviJI RGCY 7 cut(s) 13, 79, 115, 193, 231, 278, 485
CviKI_1 RGCY 7 cut(s) 13, 79, 115, 193, 231, 278, 485
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 188, 370
Eco147I AGGCCT 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 188, 370
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 188, 370
FaeI CATG 3 cut(s) 192, 212, 429
FaiI YATR 7 cut(s) 181, 190, 210, 223, 408, 427, 474
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 188, 208, 425
Fnu4HI GCNGC 3 cut(s) 14, 116, 270
FokI GGATG 2 cut(s) 188, 385
Fsp4HI GCNGC 3 cut(s) 14, 116, 270
FspBI CTAG 3 cut(s) 125, 317, 371
GluI GCNGC 3 cut(s) 14, 116, 270
HaeIII GGCC 2 cut(s) 115, 485
Hin1II CATG 3 cut(s) 192, 212, 429
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 90
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 144, 377
Hpy188I TCNGA 2 cut(s) 73, 154
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 144, 377
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 212, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 3 cut(s) 192, 212, 429
KpnI GGTACC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 76, 108
LpnPI CCDG 2 cut(s) 179, 340
Lsp1109I GCAGC 1 cut(s) 281
MaeI CTAG 3 cut(s) 125, 317, 371
MaeIII GTNAC 2 cut(s) 419, 455
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 8 cut(s) 67, 157, 160, 256, 264, 313, 475, 496
Mph1103I ATGCAT 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 188
NlaIII CATG 3 cut(s) 192, 212, 429
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 485
PkrI GCNGC 3 cut(s) 15, 117, 271
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 3 cut(s) 14, 116, 270
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 15, 81, 233, 267, 280, 318, 376
SfcI CTRYAG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SphI GCATGC 1 cut(s) 212
Sse9I AATT 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 3 cut(s) 29, 116, 430
SspMI CTAG 3 cut(s) 125, 317, 371
StuI AGGCCT 1 cut(s) 485
StyI CCWWGG 2 cut(s) 188, 370
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 341
TaqII GACCGA 1 cut(s) 120
TasI AATT 1 cut(s) 290
TauI GCSGC 1 cut(s) 118
TscAI CASTG 2 cut(s) 255, 359
TseI GCWGC 2 cut(s) 13, 269
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 2 cut(s) 255, 359
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 212
XmaJI CCTAGG 1 cut(s) 370
XspI CTAG 3 cut(s) 125, 317, 371
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.