RchiOBHm_Chr4g0393101

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000592
Physical Location & Seq
Reverse (-)
8613876 .. 8615916
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36574

Sequence Viewer

Length: 1386 bp
ATGAGCCACAAAGTTGCTAGTTCTAGTCCTCAAAATGTTGCAGTCTTAGTTTTTCCATTCGCCTCCCATCCCGGCTCTCTTCTCCGATTTGTACGTTCGATTTCAACTGTGGCCCCAGACATGCAGTTCACCTTCTTCAACACATCTAGATCAAATAGCTCCCTCTTCTCGAGTTCCGGCAAAAAGGGTTGTGATAATGTAAAGCCATACAACGTATGGGATGGCTTGCCAGATGACTACATACCCCTCTCCAGAAATCCGCTGGAGCAAATTGAGTTGTTCCTTGACAATGCACTTGGTAACTTCGAGAAGGCAATCAAAGAGGTGGAGGCTGAAACAGGACACAAGTTCGGCTGCTTGATTTCAGATGCATTCCTCTGGTTTGCCGGTGACATAGCCGAAAAGATGCACGTCTCTTGGGTGCCCTTATGGATCTGTGGACAACGTTCGCTGCTTGTTCATATTGAGACTGATATAATCAGAGAAAAAGTGGGAGCTCTTGGACAAGAAGACAAAACTGTGGACTTCCTTCCGGGATTCTCAGATCAGTTTCGAGCATGTGACTTACCCAAGGAAGCTTTATTTGGAGACATAGAATCCCCATTTACAAAAATGCTGTATAAAATGGGACAGAAGCTGCCACAAGCAACTGTGGTTGTCATCAACTCTATTGAAAATATGGACTTCACAGTTACTGAGGAGCTGAAGAAAAGACTCCAGAAGTTGCTCCTTGTTGGGCCACTACATCTTGTTCGGCCAGTACCATCAGTTATATCAGATGATGAGGAGGAAGAGAAAGATGTCTGCTTACAGTGGTTGGACAACCACCGGCCTGCGTCAGTAGCATACATTAGCTTTGGAAGTCTGGGGGCACTGCCGCCCATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAAGGTGGATTCCCCTTTCTTTGGTCATTTAGGGGAAATCAAGAGGACTTTCCACAAGGATTTATCGAAAGGACAAACAGGTTATCCATAGGAAAAGTAGTTCCATGGGTGAACCAAGAACAAATCCTAAATCATACCTCGATAGGAGTGCATGTAACACATTGCGGTTGGAATTCAATTTTAGAGAGTGTAACTTGTAGTGTTCCTCTGATTGGGAGGCCTGATTTTGCTGACCAACACATAAATATGCGGAGCGTAGAAGTTGTATGGAAGATCGGTGTGAGAATTGAGGGAGGCGTTTTCACTAAAAGCGGAGCAGTCAAGGCATTGGAACAAGTTTTATTGCTTGAACAAGGAAAACAAATGAGACATAGAGTTGGAGTCCTTAAGCAGCTTGCTCAAGAGGCTGTTGGACCAAATGGGCGTTCAGCTCAAGACTTGAAAGCTTTGGTAGAAATCATCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

461

Amino Acids

51.25

Weight (kDa)

5.62

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 111 - 420 2.2e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 5 cut(s) 260, 878, 1080, 1165, 1227
AclI AACGTT 1 cut(s) 445
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 1 cut(s) 1087
AcuI CTGAAG 1 cut(s) 725
AfaI GTAC 2 cut(s) 93, 762
AfiI CCNNNNNNNGG 2 cut(s) 936, 1127
AflII CTTAAG 1 cut(s) 1301
AgsI TTSAA 6 cut(s) 105, 139, 674, 1092, 1265, 1357
AjiI CACGTC 1 cut(s) 412
AjuI GAANNNNNNNTTGG 4 cut(s) 567, 599, 1324, 1356
AloI GAACNNNNNNTCC 2 cut(s) 999, 1031
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 4 cut(s) 418, 461, 582, 1276
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 2 cut(s) 637, 695
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 5 cut(s) 111, 737, 755, 830, 1133
ApeKI GCWGC 5 cut(s) 354, 451, 637, 893, 1306
ApoI RAATTY 1 cut(s) 1087
AspS9I GGNCC 3 cut(s) 112, 737, 1328
AsuC2I CCSGG 2 cut(s) 72, 534
AsuHPI GGTGA 3 cut(s) 121, 401, 1036
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 1328
BaeGI GKGCMC 2 cut(s) 426, 874
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 499
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 5 cut(s) 341, 438, 624, 905, 1318
BccI CCATC 3 cut(s) 75, 215, 772
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BcnI CCSGG 2 cut(s) 72, 534
BcoDI GTCTC 4 cut(s) 418, 461, 582, 1276
BfaI CTAG 3 cut(s) 18, 24, 147
BfrI CTTAAG 1 cut(s) 1301
BisI GCNGC 6 cut(s) 355, 452, 638, 878, 894, 1307
BlsI GCNGC 6 cut(s) 356, 453, 639, 879, 895, 1308
Bme1390I CCNGG 2 cut(s) 72, 534
Bme18I GGWCC 1 cut(s) 1328
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 112, 737, 1328
BmiI GGNNCC 2 cut(s) 114, 423
BmrFI CCNGG 2 cut(s) 72, 534
BmsI GCATC 2 cut(s) 358, 396
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 3 cut(s) 235, 284, 701
Bpu10I CCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 1299, 1332
BpuMI CCSGG 2 cut(s) 72, 534
BsaJI CCNNGG 3 cut(s) 570, 882, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 936, 1127
Bse118I RCCGGY 2 cut(s) 386, 828
Bse1I ACTGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 1075
BseDI CCNNGG 3 cut(s) 570, 882, 1019
BseGI GGATG 2 cut(s) 67, 226
BseLI CCNNNNNNNGG 2 cut(s) 936, 1127
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 3 cut(s) 555, 687, 894
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 2 cut(s) 713, 800
BseSI GKGCMC 2 cut(s) 426, 874
BseXI GCAGC 5 cut(s) 341, 438, 624, 905, 1318
BshFI GGCC 5 cut(s) 113, 739, 757, 832, 1135
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 5 cut(s) 72, 177, 387, 533, 829
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 2 cut(s) 936, 1127
BsmAI GTCTC 4 cut(s) 418, 461, 582, 1276
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 5 cut(s) 113, 739, 757, 832, 1135
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 3 cut(s) 426, 499, 874
Bsp143I GATC 4 cut(s) 149, 432, 544, 1188
Bsp19I CCATGG 2 cut(s) 882, 1019
BspACI CCGC 5 cut(s) 260, 878, 1080, 1165, 1227
BspANI GGCC 5 cut(s) 113, 739, 757, 832, 1135
BspCNI CTCAG 3 cut(s) 554, 688, 895
BspLI GGNNCC 2 cut(s) 114, 423
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 1 cut(s) 1075
BsrFI RCCGGY 2 cut(s) 386, 828
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 2 cut(s) 386, 828
BssECI CCNNGG 3 cut(s) 570, 882, 1019
BssMI GATC 4 cut(s) 149, 432, 544, 1188
BssT1I CCWWGG 3 cut(s) 570, 882, 1019
Bst4CI ACNGT 5 cut(s) 109, 520, 652, 691, 813
Bst6I CTCTTC 3 cut(s) 84, 170, 786
BstAFI CTTAAG 1 cut(s) 1301
BstC8I GCNNGC 3 cut(s) 227, 834, 1311
BstDEI CTNAG 4 cut(s) 46, 541, 696, 903
BstDSI CCRYGG 2 cut(s) 882, 1019
BstF5I GGATG 2 cut(s) 67, 226
BstKTI GATC 4 cut(s) 152, 435, 547, 1191
BstMAI GTCTC 4 cut(s) 418, 461, 582, 1276
BstMBI GATC 4 cut(s) 149, 432, 544, 1188
BstMWI GCNNNNNNNGC 4 cut(s) 842, 899, 1238, 1319
BstNSI RCATGY 3 cut(s) 124, 561, 1070
BstSCI CCNGG 2 cut(s) 70, 532
BstSLI GKGCMC 2 cut(s) 426, 874
BstV1I GCAGC 5 cut(s) 341, 438, 624, 905, 1318
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 5 cut(s) 113, 739, 757, 832, 1135
BtgI CCRYGG 2 cut(s) 882, 1019
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 226
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 2 cut(s) 818, 872
Cac8I GCNNGC 3 cut(s) 227, 834, 1311
CaiI CAGNNNCTG 2 cut(s) 637, 695
Cfr10I RCCGGY 2 cut(s) 386, 828
Cfr13I GGNCC 3 cut(s) 112, 737, 1328
CseI GACGC 1 cut(s) 825
Csp6I GTAC 2 cut(s) 92, 761
CviAII CATG 5 cut(s) 121, 558, 883, 1020, 1067
CviQI GTAC 2 cut(s) 92, 761
DdeI CTNAG 4 cut(s) 46, 541, 696, 903
DpnI GATC 4 cut(s) 151, 434, 546, 1190
DpnII GATC 4 cut(s) 149, 432, 544, 1188
EaeI YGGCCR 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 84, 170, 786
EarI CTCTTC 3 cut(s) 84, 170, 786
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 3 cut(s) 570, 882, 1019
Eco147I AGGCCT 1 cut(s) 1135
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 1328
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1087
EcoT14I CCWWGG 3 cut(s) 570, 882, 1019
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 3 cut(s) 570, 882, 1019
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 5 cut(s) 124, 561, 886, 1023, 1070
FaqI GGGAC 1 cut(s) 642
FatI CATG 5 cut(s) 120, 557, 882, 1019, 1066
Fnu4HI GCNGC 6 cut(s) 355, 452, 638, 878, 894, 1307
FokI GGATG 2 cut(s) 54, 233
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 6 cut(s) 355, 452, 638, 878, 894, 1307
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 6 cut(s) 355, 452, 638, 878, 894, 1307
GsuI CTGGAG 3 cut(s) 235, 284, 701
HaeIII GGCC 5 cut(s) 113, 739, 757, 832, 1135
HapII CCGG 5 cut(s) 72, 177, 387, 533, 829
HgaI GACGC 1 cut(s) 825
Hin1II CATG 5 cut(s) 124, 561, 886, 1023, 1070
HindIII AAGCTT 2 cut(s) 576, 1359
HinfI GANTC 5 cut(s) 537, 596, 714, 924, 1296
HpaII CCGG 5 cut(s) 72, 177, 387, 533, 829
HphI GGTGA 3 cut(s) 121, 401, 1036
Hpy166II GTNNAC 4 cut(s) 129, 440, 523, 1027
Hpy188I TCNGA 6 cut(s) 86, 367, 482, 544, 778, 1125
Hpy188III TCNNGA 8 cut(s) 147, 169, 252, 307, 718, 956, 1316, 1349
Hpy8I GTNNAC 4 cut(s) 129, 440, 523, 1027
HpyAV CCTTC 4 cut(s) 142, 304, 539, 911
HpyCH4III ACNGT 5 cut(s) 109, 520, 652, 691, 813
HpyCH4IV ACGT 4 cut(s) 94, 213, 411, 445
HpyCH4V TGCA 6 cut(s) 41, 124, 293, 371, 409, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 842, 899, 1238, 1319
HpyF3I CTNAG 4 cut(s) 46, 541, 696, 903
HpySE526I ACGT 4 cut(s) 94, 213, 411, 445
Hsp92II CATG 5 cut(s) 124, 561, 886, 1023, 1070
Kzo9I GATC 4 cut(s) 149, 432, 544, 1188
LmnI GCTCC 7 cut(s) 164, 265, 494, 700, 732, 1167, 1229
Lsp1109I GCAGC 5 cut(s) 341, 438, 624, 905, 1318
LweI GCATC 2 cut(s) 358, 396
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 411, 445
MaeIII GTNAC 6 cut(s) 299, 389, 560, 691, 1069, 1105
MalI GATC 4 cut(s) 151, 434, 546, 1190
MboI GATC 4 cut(s) 149, 432, 544, 1188
MboII GAAGA 7 cut(s) 71, 127, 157, 521, 718, 803, 1198
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 3 cut(s) 426, 499, 874
MluCI AATT 4 cut(s) 270, 1087, 1092, 1200
MlyI GAGTC 2 cut(s) 708, 1305
MmeI TCCRAC 4 cut(s) 798, 1064, 1273, 1306
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 1302
MslI CAYNNNNRTG 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 5 cut(s) 72, 177, 387, 533, 829
MspR9I CCNGG 2 cut(s) 72, 534
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 842, 899, 1238, 1319
NciI CCSGG 2 cut(s) 72, 534
NcoI CCATGG 2 cut(s) 882, 1019
NdeII GATC 4 cut(s) 149, 432, 544, 1188
NlaIII CATG 5 cut(s) 124, 561, 886, 1023, 1070
NlaIV GGNNCC 2 cut(s) 114, 423
NmuCI GTSAC 2 cut(s) 389, 560
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 3 cut(s) 124, 561, 1070
PaeR7I CTCGAG 1 cut(s) 169
PceI AGGCCT 1 cut(s) 1135
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 537, 596, 924
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 6 cut(s) 356, 453, 639, 879, 895, 1308
PleI GAGTC 2 cut(s) 708, 1304
PpsI GAGTC 2 cut(s) 708, 1304
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 114, 423
PspPI GGNCC 3 cut(s) 112, 737, 1328
PstNI CAGNNNCTG 2 cut(s) 637, 695
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 2 cut(s) 93, 762
RsaNI GTAC 2 cut(s) 92, 761
RseI CAYNNNNRTG 1 cut(s) 1160
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 1302
SatI GCNGC 6 cut(s) 355, 452, 638, 878, 894, 1307
Sau3AI GATC 4 cut(s) 149, 432, 544, 1188
Sau96I GGNCC 3 cut(s) 112, 737, 1328
SchI GAGTC 2 cut(s) 708, 1305
ScrFI CCNGG 2 cut(s) 72, 534
SduI GDGCHC 3 cut(s) 426, 499, 874
SfaNI GCATC 2 cut(s) 358, 396
Sfr274I CTCGAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 1328
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 1160
SmlI CTYRAG 4 cut(s) 169, 1301, 1314, 1347
SmoI CTYRAG 4 cut(s) 169, 1301, 1314, 1347
Sse9I AATT 4 cut(s) 270, 1087, 1092, 1200
SseBI AGGCCT 1 cut(s) 1135
SsiI CCGC 5 cut(s) 260, 878, 1080, 1165, 1227
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 1135
StyD4I CCNGG 2 cut(s) 70, 532
StyI CCWWGG 3 cut(s) 570, 882, 1019
TaaI ACNGT 5 cut(s) 109, 520, 652, 691, 813
TaiI ACGT 4 cut(s) 97, 216, 414, 448
TaqI TCGA 6 cut(s) 98, 170, 306, 553, 981, 1055
TasI AATT 4 cut(s) 270, 1087, 1092, 1200
TauI GCSGC 1 cut(s) 880
TfiI GAWTC 3 cut(s) 537, 596, 924
Tru1I TTAA 1 cut(s) 1302
Tru9I TTAA 1 cut(s) 1302
TscAI CASTG 2 cut(s) 818, 879
TseFI GTSAC 2 cut(s) 389, 560
TseI GCWGC 5 cut(s) 354, 451, 637, 893, 1306
Tsp45I GTSAC 2 cut(s) 389, 560
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 2 cut(s) 818, 879
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 1 cut(s) 1328
XapI RAATTY 1 cut(s) 1087
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 3 cut(s) 124, 561, 1070
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 259
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 3 cut(s) 18, 24, 147
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.