Rh4BG041700

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000592
Physical Location & Seq
Reverse (-)
7399628 .. 7400327
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG041700.1

Sequence Viewer

Length: 549 bp
ATGGACTTGAAAGTTTCCGAGGAGCTGAAGAAAAGACTCAAGAAGTTGCTTCTTGTTGGGCCGCTACATCTACTTCGGTACTCGGTACCGTCAGCACAATCAGATGATGACGAGGAGGAGAAGGATGTATGCTTACCATGGCTGGACAACCACAAACATGCATCAGTAGCATACATCAGCTTTGGAAGTGTGGGGGCACTGCCTCCAATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAAGGGGGGTTCCCATTTCTTTGGTCATTTAGGGGAAACCTAGAGGACTTCCCAAAGGATTTATCGAAAGAACATCACTGGAAAAGTTGTTCCCTGGCAATTGTATGGAAGATCGGTATGAGAATCGAGGGCGGCGTTTTCACTAAATCTGGAGCAATTAAGGTATTGGAACAAGCTCTATCGCTTGAGCAAGGAAAAGAAATGAGACAGAGAGTTGGAGTCCTTAAACAGCTTGCTCAAGAGACTGTTGGACCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTGGTAGAGATCATCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

5.98

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 2 cut(s) 62, 372
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 80, 87
AgsI TTSAA 2 cut(s) 10, 520
AjnI CCWGG 1 cut(s) 333
AloI GAACNNNNNNTCC 4 cut(s) 233, 265, 313, 345
AluBI AGCT 7 cut(s) 25, 180, 227, 416, 472, 509, 524
AluI AGCT 7 cut(s) 25, 180, 227, 416, 472, 509, 524
Alw26I GTCTC 2 cut(s) 439, 476
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 59, 491
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 439, 476
BfaI CTAG 1 cut(s) 281
BisI GCNGC 3 cut(s) 62, 219, 373
BlsI GCNGC 3 cut(s) 63, 220, 374
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 59, 491
BmiI GGNNCC 3 cut(s) 87, 251, 493
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 4 cut(s) 23, 446, 462, 495
BsaJI CCNNGG 3 cut(s) 18, 137, 333
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 18, 137, 333
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 3 cut(s) 35, 128, 131
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 439, 476
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 351, 534
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 2 cut(s) 62, 372
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 545
BspLI GGNNCC 3 cut(s) 87, 251, 493
BspT107I GGYRCC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 18, 137, 333
BssMI GATC 2 cut(s) 351, 534
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 90, 487
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 354, 537
BstMAI GTCTC 2 cut(s) 439, 476
BstMBI GATC 2 cut(s) 351, 534
BstMWI GCNNNNNNNGC 2 cut(s) 167, 224
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 2 cut(s) 197, 316
Cac8I GCNNGC 1 cut(s) 474
CciI TCATGA 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 59, 491
Csp6I GTAC 2 cut(s) 79, 86
CviAII CATG 3 cut(s) 138, 158, 546
CviJI RGCY 9 cut(s) 25, 61, 142, 180, 227, 416, 472, 509, 524
CviKI_1 RGCY 9 cut(s) 25, 61, 142, 180, 227, 416, 472, 509, 524
CviQI GTAC 2 cut(s) 79, 86
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 353, 536
DpnII GATC 2 cut(s) 351, 534
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 141, 161, 549
FaiI YATR 7 cut(s) 130, 139, 159, 172, 346, 359, 547
FatI CATG 3 cut(s) 137, 157, 545
Fnu4HI GCNGC 3 cut(s) 62, 219, 373
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 62, 219, 373
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 62, 219, 373
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 3 cut(s) 141, 161, 549
HinfI GANTC 3 cut(s) 36, 363, 459
Hpy188I TCNGA 2 cut(s) 19, 103
Hpy188III TCNNGA 5 cut(s) 40, 390, 479, 512, 546
HpyAV CCTTC 2 cut(s) 115, 236
HpyCH4III ACNGT 2 cut(s) 90, 487
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 224
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 141, 161, 549
KpnI GGTACC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 351, 534
LmnI GCTCC 2 cut(s) 22, 392
LpnPI CCDG 6 cut(s) 128, 304, 320, 347, 375, 512
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 281
MalI GATC 2 cut(s) 353, 536
MboI GATC 2 cut(s) 351, 534
MboII GAAGA 2 cut(s) 40, 361
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 2 cut(s) 339, 396
MlyI GAGTC 2 cut(s) 30, 468
MmeI TCCRAC 2 cut(s) 436, 469
MnlI CCTC 9 cut(s) 13, 106, 109, 205, 213, 223, 232, 277, 361
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 2 cut(s) 399, 465
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 167, 224
NcoI CCATGG 1 cut(s) 137
NdeII GATC 2 cut(s) 351, 534
NlaIII CATG 3 cut(s) 141, 161, 549
NlaIV GGNNCC 3 cut(s) 87, 251, 493
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 161
PagI TCATGA 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 3 cut(s) 63, 220, 374
PleI GAGTC 2 cut(s) 30, 467
PpsI GAGTC 2 cut(s) 30, 467
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 87, 251, 493
PspPI GGNCC 2 cut(s) 59, 491
RsaI GTAC 2 cut(s) 80, 87
RsaNI GTAC 2 cut(s) 79, 86
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 399, 465
SatI GCNGC 3 cut(s) 62, 219, 373
Sau3AI GATC 2 cut(s) 351, 534
Sau96I GGNCC 2 cut(s) 59, 491
SchI GAGTC 2 cut(s) 30, 468
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 1 cut(s) 170
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 4 cut(s) 38, 425, 477, 510
SmoI CTYRAG 4 cut(s) 38, 425, 477, 510
Sse9I AATT 2 cut(s) 339, 396
SsiI CCGC 2 cut(s) 62, 372
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 90, 487
TaqI TCGA 2 cut(s) 305, 366
TasI AATT 2 cut(s) 339, 396
TauI GCSGC 2 cut(s) 64, 375
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 2 cut(s) 399, 465
Tru9I TTAA 2 cut(s) 399, 465
TscAI CASTG 2 cut(s) 204, 323
TseI GCWGC 1 cut(s) 218
TspRI CASTG 2 cut(s) 204, 323
VpaK11BI GGWCC 1 cut(s) 491
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.