Rh4DG043000

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
7007511 .. 7009389
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043000.1

Sequence Viewer

Length: 1086 bp
ATGTTGAGTGCAGCTGGTCCATTCATTATATCCCACATTCCCACCGGTGAATTTGTTTGCACTTCTAGAACAAATAGCTCCCTCTTCTTGGGTTCCAACAACAAGGGCTTGGATAATGTAAAGCCTTACAATGTATGGGATGGCTTGCCGGAGGGTTACGTGCCCCCCTCTGGACCTCCGCTGGAGCAAATTGGGTTGTTCCTTGACAAGGCACCTCAAAGCTTTGAGAGGGCACTCAAAGAAGTGGAGGCTGAAACAGGACACAAGTTCGGCTGCTTGATTTCGGATGCATTTCTCTGGTTTTCCGGGGACATTGCCGAGAAAATGAACGTCCCTTGGGTGACTACATGGAGTGGACCACGCCCGCTGCTTGTTCATCTGGAGACTGATATGATCAGAGAAAAAGTGGGAGCTCCTGGGCAAGAAGACAAGACCCTGGACTTCCTTCCAGGATTCTCAAATGAGTTCCGAGCATCTGACTTACCAAAGGAAGTTGTATTTGGAAACATAGAGTCGCCACTTGCAAATATGTTGTATAAAATGGGACAGAAGCTGCCACAAGCAACTGCGGTTGCAGTCAACTCTTTTGAAACAATGGACTTGAAAGTTTCCGAGGAGCTGAAGAAAAGACTCAAGAAGTTGCTTCTTGTTGGGCCACTGCATCTAGTCCGGCCAGTACCATCAGCACAATCAGATGATGACGAGGAGGAGAAGGATGTATGCTTACCATGGCTGGACAACCACAAGCCTGCATCAGTAGCATACATCAGCTTTGGAAGTGTGGGAGCACTGCCCCCAATGGAGGTAGCAGCATTAGCCGAGGCATTAGAGGAAGGGGGATTCCCATTTCTTTGGTCATTTAGGGGGAACCTAGAGGACTTTCCCAAAGGATTCATTGAAAGAACATCTACTGGAAAAGTTGTTCCCTGGGTGAACCAGGTATTGGAACAAGCTCTGTTGCTTGAGCAAGGAAAAGAAATGAGACACAGAGTTGGAGTCCTTAAACAGCTTGCTCAAGAGGCTGTTGGACCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTAGTAGAGATCATCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

39.64

Weight (kDa)

5.06

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 943
AciI CCGC 3 cut(s) 179, 365, 569
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 5 cut(s) 88, 170, 208, 802, 943
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 4 cut(s) 590, 604, 899, 1057
AjnI CCWGG 5 cut(s) 415, 435, 448, 926, 936
AjuI GAANNNNNNNTTGG 4 cut(s) 483, 515, 926, 958
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
Alw21I GWGCWC 2 cut(s) 415, 790
Alw26I GTCTC 2 cut(s) 377, 976
AlwNI CAGNNNCTG 1 cut(s) 553
AoxI GGCC 2 cut(s) 653, 671
ApeKI GCWGC 5 cut(s) 11, 273, 367, 553, 809
ApoI RAATTY 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 44
AspS9I GGNCC 5 cut(s) 17, 173, 356, 653, 1028
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 59, 352, 943
AvaII GGWCC 4 cut(s) 17, 173, 356, 1028
BaeGI GKGCMC 2 cut(s) 165, 235
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 415, 790
BbvI GCAGC 5 cut(s) 23, 260, 354, 540, 821
BccI CCATC 2 cut(s) 134, 688
BciT130I CCWGG 5 cut(s) 417, 437, 450, 928, 938
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 377, 976
BfaI CTAG 4 cut(s) 66, 665, 872, 1064
BisI GCNGC 5 cut(s) 12, 274, 368, 554, 810
BlsI GCNGC 5 cut(s) 13, 275, 369, 555, 811
Bme1390I CCNGG 6 cut(s) 307, 417, 437, 450, 928, 938
Bme18I GGWCC 4 cut(s) 17, 173, 356, 1028
BmgT120I GGNCC 5 cut(s) 17, 173, 356, 653, 1028
BmiI GGNNCC 4 cut(s) 94, 213, 869, 1030
BmrFI CCNGG 6 cut(s) 307, 417, 437, 450, 928, 938
BmsI GCATC 4 cut(s) 277, 482, 670, 761
BpiI GAAGAC 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 1030, 1062
BpmI CTGGAG 2 cut(s) 203, 401
BpuEI CTTGAG 4 cut(s) 617, 983, 999, 1032
BpuMI CCSGG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 9 cut(s) 306, 335, 416, 435, 612, 728, 819, 926, 927
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 170, 208, 802, 943
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 674, 916
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 5 cut(s) 417, 437, 450, 928, 938
BseDI CCNNGG 9 cut(s) 306, 335, 416, 435, 612, 728, 819, 926, 927
BseGI GGATG 3 cut(s) 145, 292, 721
BseLI CCNNNNNNNGG 5 cut(s) 88, 170, 208, 802, 943
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 674, 916
BseRI GAGGAG 3 cut(s) 629, 719, 722
BseSI GKGCMC 2 cut(s) 165, 235
BseXI GCAGC 5 cut(s) 23, 260, 354, 540, 821
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 655, 673
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 415, 790
BsiSI CCGG 4 cut(s) 45, 149, 306, 670
BslFI GGGAC 3 cut(s) 317, 323, 558
BslI CCNNNNNNNGG 5 cut(s) 88, 170, 208, 802, 943
BsmAI GTCTC 2 cut(s) 377, 976
BsmFI GGGAC 3 cut(s) 317, 323, 558
BsnI GGCC 2 cut(s) 655, 673
Bsp1286I GDGCHC 4 cut(s) 165, 235, 415, 790
Bsp143I GATC 2 cut(s) 393, 1071
Bsp19I CCATGG 1 cut(s) 728
BspACI CCGC 3 cut(s) 179, 365, 569
BspANI GGCC 2 cut(s) 655, 673
BspHI TCATGA 1 cut(s) 1082
BspLI GGNNCC 4 cut(s) 94, 213, 869, 1030
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 2 cut(s) 674, 916
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 9 cut(s) 306, 335, 416, 435, 612, 728, 819, 926, 927
BssMI GATC 2 cut(s) 393, 1071
BssT1I CCWWGG 2 cut(s) 335, 728
Bst2UI CCWGG 5 cut(s) 417, 437, 450, 928, 938
Bst6I CTCTTC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 146, 365, 750, 1011
BstDSI CCRYGG 1 cut(s) 728
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 145, 292, 721
BstKTI GATC 2 cut(s) 396, 1074
BstMAI GTCTC 2 cut(s) 377, 976
BstMBI GATC 2 cut(s) 393, 1071
BstMWI GCNNNNNNNGC 3 cut(s) 758, 815, 1019
BstNI CCWGG 5 cut(s) 417, 437, 450, 928, 938
BstSCI CCNGG 6 cut(s) 305, 415, 435, 448, 926, 936
BstSLI GKGCMC 2 cut(s) 165, 235
BstV1I GCAGC 5 cut(s) 23, 260, 354, 540, 821
BstV2I GAAGAC 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 852
BsuRI GGCC 2 cut(s) 655, 673
BtgI CCRYGG 1 cut(s) 728
BtsCI GGATG 3 cut(s) 145, 292, 721
BtsI GCAGTG 2 cut(s) 656, 788
BtsIMutI CAGTG 2 cut(s) 656, 788
Cac8I GCNNGC 4 cut(s) 146, 365, 750, 1011
CaiI CAGNNNCTG 1 cut(s) 553
CciI TCATGA 1 cut(s) 1082
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 5 cut(s) 17, 173, 356, 653, 1028
CsiI ACCWGGT 1 cut(s) 936
Csp6I GTAC 1 cut(s) 677
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 3 cut(s) 348, 729, 1083
CviQI GTAC 1 cut(s) 677
DpnI GATC 2 cut(s) 395, 1073
DpnII GATC 2 cut(s) 393, 1071
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 335, 728
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 4 cut(s) 17, 173, 356, 1028
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRII CCWGG 5 cut(s) 415, 435, 448, 926, 936
EcoT14I CCWWGG 2 cut(s) 335, 728
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 335, 728
FaeI CATG 3 cut(s) 351, 732, 1086
FaqI GGGAC 3 cut(s) 317, 323, 558
FatI CATG 3 cut(s) 347, 728, 1082
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 12, 274, 368, 554, 810
FokI GGATG 3 cut(s) 152, 299, 728
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 5 cut(s) 12, 274, 368, 554, 810
FspBI CTAG 4 cut(s) 66, 665, 872, 1064
GluI GCNGC 5 cut(s) 12, 274, 368, 554, 810
GsuI CTGGAG 2 cut(s) 203, 401
HaeIII GGCC 2 cut(s) 655, 673
HapII CCGG 4 cut(s) 45, 149, 306, 670
Hin1II CATG 3 cut(s) 351, 732, 1086
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 6 cut(s) 453, 512, 630, 840, 891, 996
HpaII CCGG 4 cut(s) 45, 149, 306, 670
HphI GGTGA 3 cut(s) 59, 352, 943
Hpy166II GTNNAC 3 cut(s) 356, 580, 934
Hpy188I TCNGA 6 cut(s) 286, 398, 470, 478, 613, 694
Hpy188III TCNNGA 7 cut(s) 66, 171, 380, 634, 1016, 1049, 1083
Hpy8I GTNNAC 3 cut(s) 356, 580, 934
HpyAV CCTTC 3 cut(s) 455, 706, 827
HpyCH4IV ACGT 2 cut(s) 159, 330
HpyCH4V TGCA 7 cut(s) 11, 60, 290, 524, 575, 661, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 758, 815, 1019
HpySE526I ACGT 2 cut(s) 159, 330
Hsp92II CATG 3 cut(s) 351, 732, 1086
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 1071
LmnI GCTCC 6 cut(s) 83, 184, 410, 418, 616, 785
Lsp1109I GCAGC 5 cut(s) 23, 260, 354, 540, 821
LweI GCATC 4 cut(s) 277, 482, 670, 761
MabI ACCWGGT 1 cut(s) 936
MaeI CTAG 4 cut(s) 66, 665, 872, 1064
MaeII ACGT 2 cut(s) 159, 330
MaeIII GTNAC 2 cut(s) 155, 340
MalI GATC 2 cut(s) 395, 1073
MboI GATC 2 cut(s) 393, 1071
MboII GAAGA 3 cut(s) 76, 437, 634
MhlI GDGCHC 4 cut(s) 165, 235, 415, 790
MluCI AATT 2 cut(s) 50, 189
MlyI GAGTC 3 cut(s) 521, 624, 1005
MmeI TCCRAC 3 cut(s) 120, 973, 1006
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 1 cut(s) 1002
MspA1I CMGCKG 3 cut(s) 14, 181, 367
MspI CCGG 4 cut(s) 45, 149, 306, 670
MspR9I CCNGG 6 cut(s) 307, 417, 437, 450, 928, 938
MvaI CCWGG 5 cut(s) 417, 437, 450, 928, 938
MwoI GCNNNNNNNGC 3 cut(s) 758, 815, 1019
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 728
NdeII GATC 2 cut(s) 393, 1071
NlaIII CATG 3 cut(s) 351, 732, 1086
NlaIV GGNNCC 4 cut(s) 94, 213, 869, 1030
NmeAIII GCCGAG 2 cut(s) 343, 844
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 292
PagI TCATGA 1 cut(s) 1082
PasI CCCWGGG 1 cut(s) 927
PfeI GAWTC 3 cut(s) 453, 840, 891
PflMI CCANNNNNTGG 1 cut(s) 943
PfoI TCCNGGA 1 cut(s) 448
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 5 cut(s) 13, 275, 369, 555, 811
PleI GAGTC 3 cut(s) 520, 624, 1004
PpsI GAGTC 3 cut(s) 520, 624, 1004
Ppu21I YACGTR 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 5 cut(s) 415, 435, 448, 926, 936
PspGI CCWGG 5 cut(s) 415, 435, 448, 926, 936
PspN4I GGNNCC 4 cut(s) 94, 213, 869, 1030
PspPI GGNCC 5 cut(s) 17, 173, 356, 653, 1028
PstNI CAGNNNCTG 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 1002
SatI GCNGC 5 cut(s) 12, 274, 368, 554, 810
Sau3AI GATC 2 cut(s) 393, 1071
Sau96I GGNCC 5 cut(s) 17, 173, 356, 653, 1028
SchI GAGTC 3 cut(s) 521, 624, 1005
ScrFI CCNGG 6 cut(s) 307, 417, 437, 450, 928, 938
SduI GDGCHC 4 cut(s) 165, 235, 415, 790
SexAI ACCWGGT 1 cut(s) 936
SfaNI GCATC 4 cut(s) 277, 482, 670, 761
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 4 cut(s) 17, 173, 356, 1028
SmlI CTYRAG 4 cut(s) 632, 962, 1014, 1047
SmoI CTYRAG 4 cut(s) 632, 962, 1014, 1047
Sse9I AATT 2 cut(s) 50, 189
SsiI CCGC 3 cut(s) 179, 365, 569
SspMI CTAG 4 cut(s) 66, 665, 872, 1064
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 6 cut(s) 305, 415, 435, 448, 926, 936
StyI CCWWGG 2 cut(s) 335, 728
TaiI ACGT 2 cut(s) 162, 333
TasI AATT 2 cut(s) 50, 189
TfiI GAWTC 3 cut(s) 453, 840, 891
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TscAI CASTG 2 cut(s) 663, 795
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 5 cut(s) 11, 273, 367, 553, 809
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 13, 341, 365, 883
TspRI CASTG 2 cut(s) 663, 795
Van91I CCANNNNNTGG 1 cut(s) 943
VpaK11BI GGWCC 4 cut(s) 17, 173, 356, 1028
XagI CCTNNNNNAGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 65
XspI CTAG 4 cut(s) 66, 665, 872, 1064
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.