Rh4DG043700

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000592
Physical Location & Seq
Reverse (-)
7136830 .. 7137894
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043700.1

Sequence Viewer

Length: 390 bp
ATGCGGAGTGTAGAAGTTGTATGGAAGATCGGTGTGAGGATTGAGGGAGGCGTTTTCACAAAAACTAGAGCAATCAAGGCCTTGGAACAAGTTTTATCGCTTGAACAAGGAAAAGAAATGAGACAGAGAATTGGAATCCTTAAACAACTTGCTCAAGAGGCTATTGGACCGAATGGGCATTCAGCTCAAGACTTGAAAGCTTTAATTGGTAGAGATCATCAAGTCCTGATGACCAAAAGTCTCCGATTCTCGAAACGAAGATGCTTCTCCGTTTGCTTCTGGGTCGGGCCTGCACGCGTGCAGATTGGATTTTCGAGGTGGCGGCGGCGGGGGGCTCTGGGCGCGGTCAACCTGGTTTGGGATCAGATCTCGGATCCTGCATCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

11.28

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 297, 344
AciI CCGC 5 cut(s) 4, 322, 325, 328, 344
AclWI GGATC 3 cut(s) 368, 369, 381
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 104, 196
AhdI GACNNNNNGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 2 cut(s) 185, 200
AluI AGCT 2 cut(s) 185, 200
Alw26I GTCTC 2 cut(s) 115, 245
AlwI GGATC 3 cut(s) 368, 369, 381
AoxI GGCC 2 cut(s) 78, 287
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 167, 287
AvaII GGWCC 1 cut(s) 167
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 115, 245
BfaI CTAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 366
BisI GCNGC 2 cut(s) 323, 326
BlsI GCNGC 2 cut(s) 324, 327
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 167, 287
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 138, 171
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 358
BsgI GTGCAG 2 cut(s) 276, 320
Bsh1236I CGCG 2 cut(s) 297, 344
BshFI GGCC 2 cut(s) 80, 289
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 115, 245
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 80, 289
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 27, 214, 361, 366, 373
BspACI CCGC 5 cut(s) 4, 322, 325, 328, 344
BspANI GGCC 2 cut(s) 80, 289
BspFNI CGCG 2 cut(s) 297, 344
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 3 cut(s) 368, 369, 381
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 5 cut(s) 27, 214, 361, 366, 373
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 291, 295, 299
BstFNI CGCG 2 cut(s) 297, 344
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 5 cut(s) 30, 217, 364, 369, 376
BstMAI GTCTC 2 cut(s) 115, 245
BstMBI GATC 5 cut(s) 27, 214, 361, 366, 373
BstMWI GCNNNNNNNGC 3 cut(s) 77, 158, 341
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstUI CGCG 2 cut(s) 297, 344
BstX2I RGATCY 2 cut(s) 366, 373
BstYI RGATCY 2 cut(s) 366, 373
BsuRI GGCC 2 cut(s) 80, 289
Cac8I GCNNGC 3 cut(s) 291, 295, 299
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 167, 287
CsiI ACCWGGT 1 cut(s) 351
CviJI RGCY 6 cut(s) 80, 161, 185, 200, 289, 335
CviKI_1 RGCY 6 cut(s) 80, 161, 185, 200, 289, 335
DpnI GATC 5 cut(s) 29, 216, 363, 368, 375
DpnII GATC 5 cut(s) 27, 214, 361, 366, 373
DriI GACNNNNNGTC 1 cut(s) 237
Eam1105I GACNNNNNGTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 81
FaiI YATR 1 cut(s) 22
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 323, 326
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 323, 326
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 343
GluI GCNGC 2 cut(s) 323, 326
HaeIII GGCC 2 cut(s) 80, 289
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 2 cut(s) 135, 246
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 3 cut(s) 245, 366, 373
Hpy188III TCNNGA 4 cut(s) 155, 188, 226, 250
Hpy8I GTNNAC 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 293, 301, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 158, 341
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 5 cut(s) 27, 214, 361, 366, 373
LpnPI CCDG 6 cut(s) 239, 265, 303, 323, 338, 365
LweI GCATC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 351
MaeI CTAG 1 cut(s) 66
MalI GATC 5 cut(s) 29, 216, 363, 368, 375
MboI GATC 5 cut(s) 27, 214, 361, 366, 373
MboII GAAGA 2 cut(s) 37, 270
MflI RGATCY 2 cut(s) 366, 373
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 2 cut(s) 129, 204
MluI ACGCGT 1 cut(s) 295
MnlI CCTC 5 cut(s) 30, 37, 41, 151, 309
MseI TTAA 2 cut(s) 141, 203
MslI CAYNNNNRTG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 2 cut(s) 297, 344
MwoI GCNNNNNNNGC 3 cut(s) 77, 158, 341
NdeII GATC 5 cut(s) 27, 214, 361, 366, 373
NlaIV GGNNCC 1 cut(s) 375
PceI AGGCCT 1 cut(s) 80
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 135, 246
PkrI GCNGC 2 cut(s) 324, 327
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 2 cut(s) 167, 287
PsuI RGATCY 2 cut(s) 366, 373
RseI CAYNNNNRTG 1 cut(s) 385
SaqAI TTAA 2 cut(s) 141, 203
SatI GCNGC 2 cut(s) 323, 326
Sau3AI GATC 5 cut(s) 27, 214, 361, 366, 373
Sau96I GGNCC 2 cut(s) 167, 287
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 337
SetI ASST 4 cut(s) 187, 202, 320, 354
SexAI ACCWGGT 1 cut(s) 351
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 153, 186
SmoI CTYRAG 2 cut(s) 153, 186
Sse9I AATT 2 cut(s) 129, 204
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 5 cut(s) 4, 322, 325, 328, 344
SspMI CTAG 1 cut(s) 66
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 2 cut(s) 251, 314
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 129, 204
TauI GCSGC 2 cut(s) 325, 328
TfiI GAWTC 2 cut(s) 135, 246
Tru1I TTAA 2 cut(s) 141, 203
Tru9I TTAA 2 cut(s) 141, 203
TspGWI ACGGA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 167
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.