RLG00000009768

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
57521626 .. 57522728
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009768

Sequence Viewer

Length: 933 bp
ATGAGCCACAAAGTTGCTAGTACTAGTCCTCAAAATGTTGCAGTCTTAGTTTTTCCATTCACCTCCCATCCTGCCGCTCTTCTTCTATTATTACGTTCCATTTCAACTGTTTGCCCGGATATGCAGTTCGCCTTCTTCAACATATCTAGATCAAATAGCTCCCTCTTCTCAGGTTCCGGCAACAAGGGCTGTGCTAATATAAAGCCTTACAACCACCTTGAGTTGTTCATTGACAATGCACCTCGGATCTTCGAGAGGGCAATCAAAGAGGTGGAGGCTGAAACAGGACACAAGTTTGGCTGCTTGATTTCGGATGCATTATTCTGGTTTGCTGGAGACATAGCCGAGAAAATGCACATCCCTTGGGTGACCTCATGGATTGGTGAAATACGCTCACTTTTTGTTCATATCGAGACTGATCTAATTAGAGATAAAGTTGGAGCTCCTGGACAAGAAAACAAAACCCTGGAGTTCCTTCCAGGATTCTCAGATGAGTTTCGAGCATCTGACTTAACCAAGGAAATTGTATTTGGAGAAATAGAATCGCCACTTGCAAGAATGATGCATAAAATGGGACAAAAGCTGCCACAAGCAGCTGCAGTTGTCATCAACTCTTTTGAAACAATGGATGTGGAAGTTACTGAGGAACTGAAGAAAAGACTCCAAAAGTTGGTCCTTGTTGGTCCACTACATCTCGTCATGCCAGTACAATCAAATGATGAGGAGGAGAAGGATGGCTGTTCACAGTGGTTGGACAAGCACGAGCCTGCTTCGGTAGCATACATCAGCTTTGGAACTCTGGTGGCACTGCCTCCCATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAAGGCGGATTCCCCTTCTTTGGTCATTCCCCTAAGAGGACTTTCCACAAGGATTTATCGAAAGAACCAACGGGTTATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

311

Amino Acids

34.43

Weight (kDa)

5.49

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 670
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 2 cut(s) 75, 855
AclWI GGATC 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 2 cut(s) 22, 708
AfiI CCNNNNNNNGG 3 cut(s) 670, 869, 885
AgsI TTSAA 3 cut(s) 105, 139, 620
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 3 cut(s) 445, 465, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 6 cut(s) 159, 443, 583, 596, 789, 836
AluI AGCT 6 cut(s) 159, 443, 583, 596, 789, 836
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 330, 407
AlwI GGATC 1 cut(s) 254
ApeKI GCWGC 5 cut(s) 300, 583, 593, 596, 827
AspS9I GGNCC 2 cut(s) 673, 683
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 52, 379, 395
AvaII GGWCC 2 cut(s) 673, 683
BanII GRGCYC 1 cut(s) 445
BauI CACGAG 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 5 cut(s) 287, 570, 583, 605, 839
BccI CCATC 2 cut(s) 75, 728
BciT130I CCWGG 3 cut(s) 447, 467, 480
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 330, 407
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 3 cut(s) 18, 24, 147
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 6 cut(s) 75, 301, 584, 594, 597, 828
BlsI GCNGC 6 cut(s) 76, 302, 585, 595, 598, 829
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 4 cut(s) 116, 447, 467, 480
Bme18I GGWCC 2 cut(s) 673, 683
BmgT120I GGNCC 2 cut(s) 673, 683
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 4 cut(s) 116, 447, 467, 480
BmsI GCATC 3 cut(s) 304, 512, 552
BpmI CTGGAG 2 cut(s) 354, 488
Bpu10I CCTNAGC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 5 cut(s) 242, 362, 465, 516, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 670, 869, 885
Bse1I ACTGG 1 cut(s) 704
BseBI CCWGG 3 cut(s) 447, 467, 480
BseDI CCNNGG 5 cut(s) 242, 362, 465, 516, 816
BseGI GGATG 5 cut(s) 67, 319, 357, 634, 739
BseLI CCNNNNNNNGG 3 cut(s) 670, 869, 885
BseMII CTCAG 4 cut(s) 183, 501, 633, 828
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 2 cut(s) 737, 740
BseXI GCAGC 5 cut(s) 287, 570, 583, 605, 839
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 2 cut(s) 116, 177
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 670, 869, 885
BsmAI GTCTC 2 cut(s) 330, 407
BsmFI GGGAC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 3 cut(s) 149, 246, 418
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 2 cut(s) 75, 855
BspCNI CTCAG 4 cut(s) 182, 500, 634, 829
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 5 cut(s) 242, 362, 465, 516, 816
BssMI GATC 3 cut(s) 149, 246, 418
BssSI CACGAG 1 cut(s) 761
BssT1I CCWWGG 3 cut(s) 362, 516, 816
Bst2BI CACGAG 1 cut(s) 761
Bst2UI CCWGG 3 cut(s) 447, 467, 480
Bst4CI ACNGT 2 cut(s) 109, 747
Bst6I CTCTTC 2 cut(s) 84, 170
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 6 cut(s) 46, 169, 487, 642, 837, 882
BstDSI CCRYGG 1 cut(s) 816
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 5 cut(s) 67, 319, 357, 634, 739
BstKTI GATC 3 cut(s) 152, 249, 421
BstMAI GTCTC 2 cut(s) 330, 407
BstMBI GATC 3 cut(s) 149, 246, 418
BstMWI GCNNNNNNNGC 3 cut(s) 186, 776, 833
BstNI CCWGG 3 cut(s) 447, 467, 480
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 4 cut(s) 114, 445, 465, 478
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 5 cut(s) 287, 570, 583, 605, 839
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 5 cut(s) 67, 319, 357, 634, 739
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 2 cut(s) 752, 806
Cac8I GCNNGC 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 673, 683
Csp6I GTAC 2 cut(s) 21, 707
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviAII CATG 3 cut(s) 375, 700, 817
CviQI GTAC 2 cut(s) 21, 707
DdeI CTNAG 6 cut(s) 46, 169, 487, 642, 837, 882
DpnI GATC 3 cut(s) 151, 248, 420
DpnII GATC 3 cut(s) 149, 246, 418
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
EciI GGCGGA 1 cut(s) 870
Ecl136II GAGCTC 1 cut(s) 443
Eco130I CCWWGG 3 cut(s) 362, 516, 816
Eco24I GRGCYC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 673, 683
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 445, 465, 478
EcoT14I CCWWGG 3 cut(s) 362, 516, 816
EcoT22I ATGCAT 2 cut(s) 319, 567
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 3 cut(s) 362, 516, 816
FaeI CATG 3 cut(s) 378, 703, 820
FaqI GGGAC 1 cut(s) 588
FatI CATG 3 cut(s) 374, 699, 816
Fnu4HI GCNGC 6 cut(s) 75, 301, 584, 594, 597, 828
FokI GGATG 5 cut(s) 54, 326, 344, 641, 746
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 6 cut(s) 75, 301, 584, 594, 597, 828
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 6 cut(s) 75, 301, 584, 594, 597, 828
GsuI CTGGAG 2 cut(s) 354, 488
HapII CCGG 2 cut(s) 116, 177
Hin1II CATG 3 cut(s) 378, 703, 820
HinfI GANTC 4 cut(s) 483, 542, 660, 858
HpaII CCGG 2 cut(s) 116, 177
HphI GGTGA 3 cut(s) 52, 379, 395
Hpy166II GTNNAC 2 cut(s) 686, 743
Hpy188I TCNGA 4 cut(s) 246, 313, 490, 508
Hpy188III TCNNGA 3 cut(s) 147, 253, 412
Hpy8I GTNNAC 2 cut(s) 686, 743
HpyAV CCTTC 5 cut(s) 142, 485, 724, 845, 874
HpyCH4III ACNGT 2 cut(s) 109, 747
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 8 cut(s) 41, 124, 239, 317, 355, 554, 565, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 776, 833
HpyF3I CTNAG 6 cut(s) 46, 169, 487, 642, 837, 882
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 378, 703, 820
Kzo9I GATC 3 cut(s) 149, 246, 418
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 164, 440, 448
Lsp1109I GCAGC 5 cut(s) 287, 570, 583, 605, 839
LweI GCATC 3 cut(s) 304, 512, 552
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 367, 637
MalI GATC 3 cut(s) 151, 248, 420
MbiI CCGCTC 1 cut(s) 77
MboI GATC 3 cut(s) 149, 246, 418
MboII GAAGA 6 cut(s) 71, 74, 127, 157, 241, 664
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 2 cut(s) 423, 522
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 2 cut(s) 418, 732
Mph1103I ATGCAT 2 cut(s) 319, 567
MseI TTAA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 2 cut(s) 116, 177
MspR9I CCNGG 4 cut(s) 116, 447, 467, 480
MvaI CCWGG 3 cut(s) 447, 467, 480
MwoI GCNNNNNNNGC 3 cut(s) 186, 776, 833
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 816
NdeII GATC 3 cut(s) 149, 246, 418
NlaIII CATG 3 cut(s) 378, 703, 820
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 2 cut(s) 319, 567
PciSI GCTCTTC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 483, 542, 858
PflMI CCANNNNNTGG 1 cut(s) 670
PfoI TCCNGGA 2 cut(s) 445, 478
PkrI GCNGC 6 cut(s) 76, 302, 585, 595, 598, 829
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 445, 465, 478
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 3 cut(s) 445, 465, 478
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 673, 683
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 2 cut(s) 22, 708
RsaNI GTAC 2 cut(s) 21, 707
SacI GAGCTC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 6 cut(s) 75, 301, 584, 594, 597, 828
Sau3AI GATC 3 cut(s) 149, 246, 418
Sau96I GGNCC 2 cut(s) 673, 683
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 4 cut(s) 116, 447, 467, 480
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 3 cut(s) 304, 512, 552
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 673, 683
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 2 cut(s) 423, 522
SsiI CCGC 2 cut(s) 75, 855
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 4 cut(s) 114, 445, 465, 478
StyI CCWWGG 3 cut(s) 362, 516, 816
TaaI ACNGT 2 cut(s) 109, 747
TaiI ACGT 1 cut(s) 97
TaqI TCGA 4 cut(s) 252, 411, 499, 908
TasI AATT 2 cut(s) 423, 522
TatI WGTACW 2 cut(s) 20, 706
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 483, 542, 858
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 2 cut(s) 752, 813
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 5 cut(s) 300, 583, 593, 596, 827
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 217, 395
TspRI CASTG 2 cut(s) 752, 813
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 673, 683
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 3 cut(s) 18, 24, 147
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 2 cut(s) 319, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.