Rorug04G0002300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000592
Physical Location & Seq
Reverse (-)
448727 .. 450062
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0002300.1

Sequence Viewer

Length: 774 bp
ATGAACAGCGACCTCACCCGAAACTTCAAGCCCAATCAAGATGGACTGCAAACTAGTAGCCGGCGAGTCCACCGGCAAGAAGAAGCTCAAGATCGAGGTCTGGCCTCAGTCAGGCAAGAGCTACTCTGCTATCGGCTCCTGATCGCTGAGATTCTGAGAAAGCATGGACGTCCGCTTCTGATCCTCTCTTTATATAAGGCCCGATCACAAGCGGATGTCCGCCAACTGATGCAAAAGTGCGGAAGCCGCTCACAGAGGCTCGGGGCGGCGATGATGGCGACTCTAGTTCTGTCCTCAGAGACCACGGACACCCAGGACGTGATCGCCATCCAATTCAGGGCCAACGTGATCGAAGTCGAAGGTCTGCGCCAGAAGTTCAACAAAAACTCCGAGCATACCAATTTCGACTTCGAACTCATCACTGAGGAGTCCACCGGCAAACCAATTTCGACTTCGATCACGTCCGGGGTGTCCCTAGTCTCTGAGGACAGAACCAGAGTCGCTCTAAGCCTCCAGCGGCGGGGCTTGCCGACTAACGCCAGGGGTCGGACGGACCGGTCTGCAGTCGGTGGAGTCGCCGGCGATGTGGTTGCAGCGCTACCCAGAAACCTGCAGTTGCAGGTGAGGTCGCTGCCCAGAAACCTGCAACTCCGACCTCCTTCGACCTCGAACACTGCCCAGAACCGTTCGGGATGCCTCCGGCCTCCGTCCGCCAAGCCCCGAGCCGCCGTCGCCACCTGGAACGCCGCTGCTGCGCCGCCGTTCGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

257

Amino Acids

28.29

Weight (kDa)

10.9

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
AasI GACNNNNNNGTC 1 cut(s) 556
AatII GACGTC 1 cut(s) 172
Acc36I ACCTGC 3 cut(s) 610, 618, 651
AccBSI CCGCTC 1 cut(s) 249
AclWI GGATC 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 169
AfeI AGCGCT 1 cut(s) 597
AfiI CCNNNNNNNGG 4 cut(s) 111, 337, 520, 546
AgeI ACCGGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 28, 379
AhlI ACTAGT 1 cut(s) 53
AjiI CACGTC 2 cut(s) 319, 462
AjnI CCWGG 3 cut(s) 312, 539, 737
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 436, 468
AluBI AGCT 2 cut(s) 86, 121
AluI AGCT 2 cut(s) 86, 121
Alw26I GTCTC 2 cut(s) 293, 484
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 2 cut(s) 260, 720
Aor51HI AGCGCT 1 cut(s) 597
AoxI GGCC 4 cut(s) 102, 198, 339, 701
ApeKI GCWGC 4 cut(s) 593, 631, 749, 752
AsiGI ACCGGT 1 cut(s) 555
AspLEI GCGC 3 cut(s) 369, 598, 757
AspS9I GGNCC 3 cut(s) 199, 339, 553
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 2 cut(s) 7, 634
AsuII TTCGAA 1 cut(s) 411
AvaI CYCGRG 2 cut(s) 260, 720
AvaII GGWCC 1 cut(s) 553
BbvI GCAGC 4 cut(s) 605, 618, 736, 739
BccI CCATC 3 cut(s) 35, 268, 335
BceAI ACGGC 2 cut(s) 713, 745
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 3 cut(s) 314, 541, 739
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 293, 484
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 3 cut(s) 54, 284, 476
BfmI CTRYAG 2 cut(s) 561, 611
BfoI RGCGCY 1 cut(s) 599
BfuAI ACCTGC 3 cut(s) 610, 618, 651
Bme1390I CCNGG 4 cut(s) 314, 466, 541, 739
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 2 cut(s) 260, 720
BmgBI CACGTC 2 cut(s) 319, 462
BmgT120I GGNCC 3 cut(s) 199, 339, 553
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 4 cut(s) 314, 466, 541, 739
BmsI GCATC 2 cut(s) 219, 683
BpmI CTGGAG 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 303, 312, 465, 540
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 337, 520, 546
Bse118I RCCGGY 5 cut(s) 60, 72, 434, 555, 578
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 3 cut(s) 314, 541, 739
BseDI CCNNGG 4 cut(s) 303, 312, 465, 540
BseGI GGATG 3 cut(s) 220, 327, 698
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 4 cut(s) 111, 337, 520, 546
BseMII CTCAG 6 cut(s) 120, 138, 146, 309, 414, 474
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 4 cut(s) 605, 618, 736, 739
BshFI GGCC 4 cut(s) 104, 200, 341, 703
BshTI ACCGGT 1 cut(s) 555
BsiHKCI CYCGRG 2 cut(s) 260, 720
BsiSI CCGG 7 cut(s) 61, 73, 435, 465, 556, 579, 700
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 4 cut(s) 111, 337, 520, 546
BsmAI GTCTC 2 cut(s) 293, 484
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 4 cut(s) 104, 200, 341, 703
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 2 cut(s) 260, 720
Bsp119I TTCGAA 1 cut(s) 411
Bsp143I GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
BspANI GGCC 4 cut(s) 104, 200, 341, 703
BspCNI CTCAG 6 cut(s) 119, 139, 147, 308, 415, 475
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 2 cut(s) 565, 615
BspMI ACCTGC 3 cut(s) 610, 618, 651
BspPI GGATC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 249
BsrFI RCCGGY 5 cut(s) 60, 72, 434, 555, 578
BssAI RCCGGY 5 cut(s) 60, 72, 434, 555, 578
BssECI CCNNGG 4 cut(s) 303, 312, 465, 540
BssMI GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
BssNI GRCGYC 1 cut(s) 169
Bst2UI CCWGG 3 cut(s) 314, 541, 739
Bst4CI ACNGT 1 cut(s) 686
BstACI GRCGYC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 62, 527, 580
BstDEI CTNAG 7 cut(s) 106, 147, 155, 295, 423, 483, 506
BstDSI CCRYGG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 220, 327, 698
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 3 cut(s) 369, 598, 757
BstKTI GATC 7 cut(s) 94, 144, 183, 206, 324, 351, 459
BstMAI GTCTC 2 cut(s) 293, 484
BstMBI GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
BstMWI GCNNNNNNNGC 5 cut(s) 246, 275, 526, 731, 752
BstNI CCWGG 3 cut(s) 314, 541, 739
BstSCI CCNGG 4 cut(s) 312, 464, 539, 737
BstSFI CTRYAG 2 cut(s) 561, 611
BstV1I GCAGC 4 cut(s) 605, 618, 736, 739
BsuRI GGCC 4 cut(s) 104, 200, 341, 703
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 2 cut(s) 284, 597
BtrI CACGTC 2 cut(s) 319, 462
BtsCI GGATG 3 cut(s) 220, 327, 698
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 420, 672
BveI ACCTGC 3 cut(s) 610, 618, 651
Cac8I GCNNGC 3 cut(s) 62, 527, 580
CfoI GCGC 3 cut(s) 369, 598, 757
Cfr10I RCCGGY 5 cut(s) 60, 72, 434, 555, 578
Cfr13I GGNCC 3 cut(s) 199, 339, 553
CpoI CGGWCCG 1 cut(s) 553
CspAI ACCGGT 1 cut(s) 555
CspI CGGWCCG 1 cut(s) 553
CviAII CATG 1 cut(s) 164
DdeI CTNAG 7 cut(s) 106, 147, 155, 295, 423, 483, 506
DpnI GATC 7 cut(s) 93, 143, 182, 205, 323, 350, 458
DpnII GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
EciI GGCGGA 2 cut(s) 209, 700
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 553
Eco47III AGCGCT 1 cut(s) 597
Eco88I CYCGRG 2 cut(s) 260, 720
EcoNI CCTNNNNNAGG 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 312, 539, 737
FaeI CATG 1 cut(s) 167
FaiI YATR 4 cut(s) 165, 193, 195, 396
FaqI GGGAC 1 cut(s) 457
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 513
FokI GGATG 3 cut(s) 227, 314, 705
FspBI CTAG 3 cut(s) 54, 284, 476
GlaI GCGC 3 cut(s) 368, 597, 756
GsuI CTGGAG 1 cut(s) 497
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 4 cut(s) 104, 200, 341, 703
HapII CCGG 7 cut(s) 61, 73, 435, 465, 556, 579, 700
HhaI GCGC 3 cut(s) 369, 598, 757
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 3 cut(s) 367, 596, 755
HinP1I GCGC 3 cut(s) 367, 596, 755
HinfI GANTC 6 cut(s) 66, 151, 280, 428, 498, 573
HpaII CCGG 7 cut(s) 61, 73, 435, 465, 556, 579, 700
HphI GGTGA 2 cut(s) 7, 634
Hpy166II GTNNAC 2 cut(s) 70, 432
Hpy188I TCNGA 7 cut(s) 156, 180, 298, 391, 484, 549, 653
Hpy188III TCNNGA 4 cut(s) 38, 89, 139, 690
Hpy8I GTNNAC 2 cut(s) 70, 432
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 2 cut(s) 353, 669
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 4 cut(s) 169, 318, 345, 461
HpyCH4V TGCA 7 cut(s) 49, 232, 563, 593, 613, 619, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 275, 526, 731, 752
HpyF3I CTNAG 7 cut(s) 106, 147, 155, 295, 423, 483, 506
HpySE526I ACGT 4 cut(s) 169, 318, 345, 461
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 3 cut(s) 367, 596, 755
KroI GCCGGC 2 cut(s) 60, 578
KroNI GCCGGC 2 cut(s) 62, 580
Kzo9I GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 4 cut(s) 605, 618, 736, 739
LweI GCATC 2 cut(s) 219, 683
MaeI CTAG 3 cut(s) 54, 284, 476
MaeII ACGT 4 cut(s) 169, 318, 345, 461
MalI GATC 7 cut(s) 93, 143, 182, 205, 323, 350, 458
MbiI CCGCTC 1 cut(s) 249
MboI GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
MboII GAAGA 1 cut(s) 92
MluCI AATT 3 cut(s) 332, 400, 444
MlyI GAGTC 5 cut(s) 75, 274, 437, 507, 582
MmeI TCCRAC 2 cut(s) 527, 676
MreI CGCCGGCG 1 cut(s) 578
MroNI GCCGGC 2 cut(s) 60, 578
MspA1I CMGCKG 2 cut(s) 517, 749
MspI CCGG 7 cut(s) 61, 73, 435, 465, 556, 579, 700
MspR9I CCNGG 4 cut(s) 314, 466, 541, 739
MvaI CCWGG 3 cut(s) 314, 541, 739
MwoI GCNNNNNNNGC 5 cut(s) 246, 275, 526, 731, 752
NaeI GCCGGC 2 cut(s) 62, 580
NciI CCSGG 1 cut(s) 466
NdeII GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
NgoMIV GCCGGC 2 cut(s) 60, 578
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 137
NspV TTCGAA 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 610
PdiI GCCGGC 2 cut(s) 62, 580
PfeI GAWTC 1 cut(s) 151
PinAI ACCGGT 1 cut(s) 555
PleI GAGTC 5 cut(s) 74, 274, 436, 506, 581
PpsI GAGTC 5 cut(s) 74, 274, 436, 506, 581
Psp6I CCWGG 3 cut(s) 312, 539, 737
PspGI CCWGG 3 cut(s) 312, 539, 737
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 3 cut(s) 199, 339, 553
PstI CTGCAG 2 cut(s) 565, 615
Rsr2I CGGWCCG 1 cut(s) 553
RsrII CGGWCCG 1 cut(s) 553
Sau3AI GATC 7 cut(s) 91, 141, 180, 203, 321, 348, 456
Sau96I GGNCC 3 cut(s) 199, 339, 553
SchI GAGTC 5 cut(s) 75, 274, 437, 507, 582
ScrFI CCNGG 4 cut(s) 314, 466, 541, 739
SfaNI GCATC 2 cut(s) 219, 683
SfcI CTRYAG 2 cut(s) 561, 611
SfuI TTCGAA 1 cut(s) 411
SgrAI CRCCGGYG 1 cut(s) 578
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 3 cut(s) 332, 400, 444
SspMI CTAG 3 cut(s) 54, 284, 476
StyD4I CCNGG 4 cut(s) 312, 464, 539, 737
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 4 cut(s) 172, 321, 348, 464
TaqI TCGA 9 cut(s) 94, 351, 357, 405, 411, 449, 455, 662, 668
TasI AATT 3 cut(s) 332, 400, 444
TauI GCSGC 6 cut(s) 249, 269, 520, 728, 749, 760
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 2 cut(s) 427, 679
TseI GCWGC 4 cut(s) 593, 631, 749, 752
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 320, 566, 696
TspRI CASTG 2 cut(s) 427, 679
VpaK11BI GGWCC 1 cut(s) 553
XagI CCTNNNNNAGG 1 cut(s) 109
XspI CTAG 3 cut(s) 54, 284, 476
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.