Rmu_co8079702.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8079702.1
OG0000592
Physical Location & Seq
Reverse (-)
2 .. 527
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8079702.1_g000001.1.cds

Sequence Viewer

Length: 526 bp
atgccagtacaatcaattgtatcaaatgatgaggaggagaaggatggctgtttacagtggttggacaagcacgagcctgcttcggtagcatacgtcagctttggaactatggtggcactgcctcccatggaggtagcagcattagctgaggcattagaggaaggcggattcccctttctttggtcatttaggggaaatcaagaggactttccacaaggatttatcgaaagaaccaacgggttatccataggaaaagtagttccatgggtgaaccaagagaaaatcctcaatcatacctcggtaggagtgcatgtaacacactgcggttggaactcaattttggagagtgtaactagtggtgtgcctatgattgggaggccttactttgttgatcaaaatttaaatatgcggagtgtagaagttgtatggaagatcggtgtgaggattgagggaggcgttttcacaaaaactagagtagtcaaggccttggaacaagttttatcgcttgaacaaggaaaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

175

Amino Acids

19.43

Weight (kDa)

4.99

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 165, 324, 409
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 180, 371
AgsI TTSAA 1 cut(s) 509
AhlI ACTAGT 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 99, 146
AluI AGCT 2 cut(s) 99, 146
AoxI GGCC 2 cut(s) 377, 483
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 280
BauI CACGAG 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 38
BclI TGATCA 1 cut(s) 391
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 354, 471
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 147
BsaJI CCNNGG 4 cut(s) 126, 263, 297, 486
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 371
Bse1I ACTGG 1 cut(s) 5
BseDI CCNNGG 4 cut(s) 126, 263, 297, 486
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 180, 371
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 5
BseRI GAGGAG 2 cut(s) 47, 50
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 2 cut(s) 379, 485
BslI CCNNNNNNNGG 2 cut(s) 180, 371
BsnI GGCC 2 cut(s) 379, 485
Bsp143I GATC 2 cut(s) 391, 432
Bsp19I CCATGG 2 cut(s) 126, 263
BspACI CCGC 3 cut(s) 165, 324, 409
BspANI GGCC 2 cut(s) 379, 485
BspCNI CTCAG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 126, 263, 297, 486
BssMI GATC 2 cut(s) 391, 432
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 3 cut(s) 126, 263, 486
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 2 cut(s) 126, 263
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 394, 435
BstMBI GATC 2 cut(s) 391, 432
BstMWI GCNNNNNNNGC 2 cut(s) 86, 143
BstNSI RCATGY 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 379, 485
BtgI CCRYGG 2 cut(s) 126, 263
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 2 cut(s) 116, 319
BtsIMutI CAGTG 3 cut(s) 62, 116, 319
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 127, 264, 311
CviJI RGCY 6 cut(s) 48, 76, 99, 146, 379, 485
CviKI_1 RGCY 6 cut(s) 48, 76, 99, 146, 379, 485
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 393, 434
DpnII GATC 2 cut(s) 391, 432
DraI TTTAAA 1 cut(s) 402
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 3 cut(s) 126, 263, 486
Eco147I AGGCCT 2 cut(s) 379, 485
EcoT14I CCWWGG 3 cut(s) 126, 263, 486
ErhI CCWWGG 3 cut(s) 126, 263, 486
FaeI CATG 3 cut(s) 130, 267, 314
FatI CATG 3 cut(s) 126, 263, 310
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 354, 471
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 379, 485
Hin1II CATG 3 cut(s) 130, 267, 314
HinfI GANTC 1 cut(s) 168
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 53, 271
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 53, 271
HpyAV CCTTC 2 cut(s) 34, 155
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 143
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 130, 267, 314
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 391, 432
LpnPI CCDG 2 cut(s) 18, 90
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 2 cut(s) 354, 471
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 313, 349
MalI GATC 2 cut(s) 393, 434
MboI GATC 2 cut(s) 391, 432
MboII GAAGA 1 cut(s) 442
MfeI CAATTG 1 cut(s) 15
MluCI AATT 3 cut(s) 15, 336, 397
MmeI TCCRAC 2 cut(s) 42, 308
MseI TTAA 1 cut(s) 401
MunI CAATTG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 86, 143
NcoI CCATGG 2 cut(s) 126, 263
NdeII GATC 2 cut(s) 391, 432
NlaIII CATG 3 cut(s) 130, 267, 314
NspI RCATGY 1 cut(s) 314
PceI AGGCCT 2 cut(s) 379, 485
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 139
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 391, 432
SetI ASST 5 cut(s) 96, 101, 135, 148, 299
SmiI ATTTAAAT 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 3 cut(s) 15, 336, 397
SseBI AGGCCT 2 cut(s) 379, 485
SsiI CCGC 3 cut(s) 165, 324, 409
SspMI CTAG 2 cut(s) 354, 471
StuI AGGCCT 2 cut(s) 379, 485
StyI CCWWGG 3 cut(s) 126, 263, 486
SwaI ATTTAAAT 1 cut(s) 402
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 225
TasI AATT 3 cut(s) 15, 336, 397
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 62, 123, 326
TseI GCWGC 1 cut(s) 137
TspRI CASTG 3 cut(s) 62, 123, 326
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 314
XspI CTAG 2 cut(s) 354, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.