RchiOBHm_Chr4g0393051

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000592
Physical Location & Seq
Reverse (-)
8554908 .. 8555856
949 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36569

Sequence Viewer

Length: 894 bp
ATGTTTATTCAAGGTTTTCTTTTCATATATAGTAGACAACTGATAAAACAAACATATCCAAAAGTTTCACTTAAAATTTCCATATTTTTCTTCAAATTTCCATTATTTTGCTTTATTTTTTATCGAAATCGATATATCCTCGAAATTTCCGTTTTCGGGACCATCGATATTTCCTCGAAACTCGATATTTTGGTCCTTGGACAGAAGCTGCCACAAGCAACTGCGGTTGCCGACAACTCTTTTGAAACAATGGACTTGAAAGTTTCCGAGGAGCTGAAGAAAAGACTCAAGAAGTTGCTTCTTGTTGGGCCGCTACATCTACTTCGGTACTCGGTACCGTCAGCACAATCAGATGATGACGAGGAGGAGAAGGATGTATGCTTACCATGGCTGGACAACCACAAACATGCATCAGTAGCATACATCAGCTTTGGAAGTGTGGGGGCACTGCCTCCAATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAAGGGGGGTTCCCATTTCTTTGGTCATTTAGGGGAAACCTAGAGGACTTCCCAAAGGATTTATCGAAAGAACATCACTGGAAAAGTTGTTCCCTGGGTGAACCAAGTGCAAATCCTAAATCATCCGTCTATAGGGGTGTTTGTTACACATGGCGGTTGGAAATCAGTTTTGGAGAGTGTAACTTGTGCGTAGCAATTGTATGGAAGATCGGTATGAGAATCGAGGGCGGCGTTTTCACTAAATCTGGAGCAATTAAGGTATTGGAACAAGCTCTATCGCTTGAGCAAGGAAAAGAAATGAGACAGAGAGTTGGAGTCCTTAAACAGCTTGCTCAAGAGACTGTTGGACCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTGGTAGAGATCATCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

297

Amino Acids

33.41

Weight (kDa)

7.59

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 334
AccI GTMKAC 1 cut(s) 34
AciI CCGC 4 cut(s) 224, 311, 643, 717
AcsI RAATTY 3 cut(s) 75, 95, 144
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 2 cut(s) 329, 336
AfiI CCNNNNNNNGG 2 cut(s) 156, 621
AgsI TTSAA 5 cut(s) 11, 94, 245, 259, 865
AjnI CCWGG 1 cut(s) 582
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AloI GAACNNNNNNTCC 4 cut(s) 482, 514, 562, 594
AluBI AGCT 8 cut(s) 208, 274, 429, 476, 761, 817, 854, 869
AluI AGCT 8 cut(s) 208, 274, 429, 476, 761, 817, 854, 869
Alw26I GTCTC 2 cut(s) 784, 821
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 208, 467
ApoI RAATTY 3 cut(s) 75, 95, 144
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp718I GGTACC 1 cut(s) 334
AspS9I GGNCC 4 cut(s) 159, 193, 308, 836
AsuHPI GGTGA 1 cut(s) 599
AvaII GGWCC 3 cut(s) 159, 193, 836
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 195, 479
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 784, 821
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 619
BisI GCNGC 4 cut(s) 209, 311, 468, 718
BlsI GCNGC 4 cut(s) 210, 312, 469, 719
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 3 cut(s) 159, 193, 836
BmgT120I GGNCC 4 cut(s) 159, 193, 308, 836
BmiI GGNNCC 4 cut(s) 160, 336, 500, 838
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 838, 870
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 4 cut(s) 272, 791, 807, 840
Bsa29I ATCGAT 2 cut(s) 130, 165
BsaJI CCNNGG 5 cut(s) 196, 267, 386, 582, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 621
Bse1I ACTGG 1 cut(s) 572
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 2 cut(s) 130, 165
BseDI CCNNGG 5 cut(s) 196, 267, 386, 582, 583
BseGI GGATG 2 cut(s) 379, 611
BseLI CCNNNNNNNGG 2 cut(s) 156, 621
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 572
BseRI GAGGAG 3 cut(s) 284, 377, 380
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 2 cut(s) 195, 479
BshFI GGCC 1 cut(s) 310
BshNI GGYRCC 1 cut(s) 334
BshVI ATCGAT 2 cut(s) 130, 165
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 156, 621
BsmAI GTCTC 2 cut(s) 784, 821
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 2 cut(s) 696, 879
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 4 cut(s) 224, 311, 643, 717
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 2 cut(s) 130, 165
BspHI TCATGA 1 cut(s) 890
BspLI GGNNCC 4 cut(s) 160, 336, 500, 838
BspT107I GGYRCC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 5 cut(s) 196, 267, 386, 582, 583
BssMI GATC 2 cut(s) 696, 879
BssT1I CCWWGG 2 cut(s) 196, 386
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 339, 832
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 379, 611
BstKTI GATC 2 cut(s) 699, 882
BstMAI GTCTC 2 cut(s) 784, 821
BstMBI GATC 2 cut(s) 696, 879
BstMWI GCNNNNNNNGC 2 cut(s) 416, 473
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 619
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 195, 479
BstXI CCANNNNNNTGG 1 cut(s) 510
Bsu15I ATCGAT 2 cut(s) 130, 165
BsuRI GGCC 1 cut(s) 310
BsuTUI ATCGAT 2 cut(s) 130, 165
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 2 cut(s) 379, 611
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 446, 565
Cac8I GCNNGC 1 cut(s) 819
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 890
Cfr13I GGNCC 4 cut(s) 159, 193, 308, 836
ClaI ATCGAT 2 cut(s) 130, 165
Csp6I GTAC 2 cut(s) 328, 335
CviAII CATG 4 cut(s) 387, 407, 639, 891
CviQI GTAC 2 cut(s) 328, 335
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 698, 881
DpnII GATC 2 cut(s) 696, 879
Eco130I CCWWGG 2 cut(s) 196, 386
Eco47I GGWCC 3 cut(s) 159, 193, 836
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 196, 386
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 2 cut(s) 196, 386
FaeI CATG 4 cut(s) 390, 410, 642, 894
FalI AAGNNNNNCTT 3 cut(s) 35, 54, 86
FaqI GGGAC 1 cut(s) 172
FatI CATG 4 cut(s) 386, 406, 638, 890
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 209, 311, 468, 718
FokI GGATG 2 cut(s) 386, 598
Fsp4HI GCNGC 4 cut(s) 209, 311, 468, 718
FspBI CTAG 1 cut(s) 530
GluI GCNGC 4 cut(s) 209, 311, 468, 718
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 4 cut(s) 390, 410, 642, 894
HinfI GANTC 3 cut(s) 285, 708, 804
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 2 cut(s) 35, 590
Hpy188I TCNGA 2 cut(s) 268, 352
Hpy188III TCNNGA 6 cut(s) 157, 289, 735, 824, 857, 891
Hpy8I GTNNAC 2 cut(s) 35, 590
HpyAV CCTTC 2 cut(s) 364, 485
HpyCH4III ACNGT 2 cut(s) 339, 832
HpyCH4V TGCA 2 cut(s) 410, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 473
HpyF3I CTNAG 1 cut(s) 477
Hsp92II CATG 4 cut(s) 390, 410, 642, 894
KpnI GGTACC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 696, 879
LmnI GCTCC 2 cut(s) 271, 737
LpnPI CCDG 6 cut(s) 377, 553, 569, 596, 720, 857
Lsp1109I GCAGC 2 cut(s) 195, 479
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 632, 668
MalI GATC 2 cut(s) 698, 881
MboI GATC 2 cut(s) 696, 879
MboII GAAGA 3 cut(s) 82, 289, 706
MfeI CAATTG 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 5 cut(s) 75, 95, 144, 684, 741
MlyI GAGTC 2 cut(s) 279, 813
MmeI TCCRAC 3 cut(s) 627, 781, 814
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 3 cut(s) 72, 744, 810
MslI CAYNNNNRTG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 584
MwoI GCNNNNNNNGC 2 cut(s) 416, 473
NcoI CCATGG 1 cut(s) 386
NdeII GATC 2 cut(s) 696, 879
NlaIII CATG 4 cut(s) 390, 410, 642, 894
NlaIV GGNNCC 4 cut(s) 160, 336, 500, 838
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 410
PagI TCATGA 1 cut(s) 890
PasI CCCWGGG 1 cut(s) 583
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 162, 717
PfeI GAWTC 1 cut(s) 708
PkrI GCNGC 4 cut(s) 210, 312, 469, 719
PleI GAGTC 2 cut(s) 279, 812
PpsI GAGTC 2 cut(s) 279, 812
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 4 cut(s) 160, 336, 500, 838
PspPI GGNCC 4 cut(s) 159, 193, 308, 836
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 329, 336
RsaNI GTAC 2 cut(s) 328, 335
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 72, 744, 810
SatI GCNGC 4 cut(s) 209, 311, 468, 718
Sau3AI GATC 2 cut(s) 696, 879
Sau96I GGNCC 4 cut(s) 159, 193, 308, 836
SchI GAGTC 2 cut(s) 279, 813
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 3 cut(s) 159, 193, 836
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 4 cut(s) 287, 770, 822, 855
SmoI CTYRAG 4 cut(s) 287, 770, 822, 855
Sse9I AATT 5 cut(s) 75, 95, 144, 684, 741
SsiI CCGC 4 cut(s) 224, 311, 643, 717
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 2 cut(s) 196, 386
TaaI ACNGT 2 cut(s) 339, 832
TaqI TCGA 8 cut(s) 124, 130, 141, 165, 176, 183, 554, 711
TasI AATT 5 cut(s) 75, 95, 144, 684, 741
TauI GCSGC 2 cut(s) 313, 720
TfiI GAWTC 1 cut(s) 708
Tru1I TTAA 3 cut(s) 72, 744, 810
Tru9I TTAA 3 cut(s) 72, 744, 810
TscAI CASTG 2 cut(s) 453, 572
TseI GCWGC 2 cut(s) 208, 467
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 2 cut(s) 139, 604
TspRI CASTG 2 cut(s) 453, 572
VpaK11BI GGWCC 3 cut(s) 159, 193, 836
XapI RAATTY 3 cut(s) 75, 95, 144
XceI RCATGY 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 1 cut(s) 530
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.