Rh4AG046200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000592
Physical Location & Seq
Forward (+)
9695835 .. 9696050
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG046200.1

Sequence Viewer

Length: 216 bp
ATGGGACAGAAGCTGCCACAAGCAACTGCGGTTGCTATCAACTCTTTTGAAACAATGGACTTGAAAGTTGGCGAGGAGTTGAAGAAAAGACTCAGAAAGTTGCTCCTTGTTGGACCACTACATCTAGTCTGGCCAATACCATCAGCACAATCAGATGATGGCGAGGAAGAGAATGATGTATGTTACTATGGCTGGACAACTACAAGCCTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

71

Amino Acids

7.97

Weight (kDa)

5.16

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 131
AgsI TTSAA 3 cut(s) 50, 64, 82
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 133
BccI CCATC 2 cut(s) 148, 152
BfaI CTAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BseMII CTCAG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 133
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 113
CviJI RGCY 4 cut(s) 13, 133, 192, 207
CviKI_1 RGCY 4 cut(s) 13, 133, 192, 207
DdeI CTNAG 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 113
FaiI YATR 2 cut(s) 181, 189
FaqI GGGAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 133
HinfI GANTC 1 cut(s) 90
Hpy188I TCNGA 2 cut(s) 95, 154
HpyF3I CTNAG 1 cut(s) 92
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 115, 178
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 2 cut(s) 94, 179
MlsI TGGCCA 1 cut(s) 133
MluNI TGGCCA 1 cut(s) 133
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 67, 157
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 13
SatI GCNGC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 84
SetI ASST 1 cut(s) 15
SgeI CNNG 8 cut(s) 32, 73, 85, 119, 137, 142, 175, 205
SinI GGWCC 1 cut(s) 113
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 125
TseI GCWGC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 113
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.