Rmu_sc0008339.1_g000004

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008339.1
Physical Location & Seq
Forward (+)
5793 .. 6866
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008339.1_g000004.1.cds

Sequence Viewer

Length: 897 bp
atgaatgtcccttgggtgactacatggagtggaccatgcccgctgcttgttcatctggagactgatatgatcaaagaaaaagtgggagctcctgggaaagaagacaagacactggattttcttccagaattctcaaataagttccgagcatctaacttaccaaaggaagttgtatttggaaacatagagtcgccacttgcaaatatgttgtataaaatgggacagaagctgccacaagcaactgcggttgccgacaactcttttgaaacaatggacttgaaatttttagaggacctaaataaaagactcaagaagttgctctttattgggccgctacatctagttcggtcggtaccgtcagcacaatcagatgatgacgaggaggagaaggatgtatgcttaccatggctggacaaccacaagcatgcatcagtagcatacatcagctttcgaagtgtgggggcactgcctccaatgaagaggacttatcaaaggatttatcgaaagaacatcactggaaaagttgttccctgggtgaaccaagtgcaaatcctaaatcatccgtctataggggtgtttgttacacatggcggttggaaatcagttttggagagtgtaacttgtggtgtgcctatgattgggaggcctcattttgctgatgaaattctgaatatgcggagcgtagcagttgtatggaagatcggtatgagaatcgagggtggcgttttcactaaatctggaacaattaaggtattggaacaagcactatcgcttgagcatggaaaagaaatgagacagagagttggagtacttaaacagcttgctcaagagactgttggacccaatgggagttcagctcaagacttgaaagctctggtagagatcatcaaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

33.25

Weight (kDa)

8.98

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 5 cut(s) 41, 245, 332, 591, 676
AcsI RAATTY 3 cut(s) 128, 281, 663
AfaI GTAC 2 cut(s) 354, 810
AfiI CCNNNNNNNGG 2 cut(s) 569, 638
AgsI TTSAA 3 cut(s) 266, 280, 868
AjnI CCWGG 2 cut(s) 91, 530
AjuI GAANNNNNNNTTGG 4 cut(s) 159, 191, 590, 622
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 6 cut(s) 89, 229, 447, 820, 857, 872
AluI AGCT 6 cut(s) 89, 229, 447, 820, 857, 872
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 53, 787, 824
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 2 cut(s) 329, 644
ApeKI GCWGC 2 cut(s) 43, 229
ApoI RAATTY 3 cut(s) 128, 281, 663
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp718I GGTACC 1 cut(s) 352
AspS9I GGNCC 4 cut(s) 32, 292, 329, 839
AsuHPI GGTGA 2 cut(s) 28, 547
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 3 cut(s) 32, 292, 839
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 30, 216
BciT130I CCWGG 2 cut(s) 93, 532
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 53, 787, 824
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 3 cut(s) 44, 230, 332
BlsI GCNGC 3 cut(s) 45, 231, 333
BmcAI AGTACT 1 cut(s) 810
Bme1390I CCNGG 2 cut(s) 93, 532
Bme18I GGWCC 3 cut(s) 32, 292, 839
BmgT120I GGNCC 4 cut(s) 32, 292, 329, 839
BmiI GGNNCC 2 cut(s) 354, 841
BmrFI CCNGG 2 cut(s) 93, 532
BmsI GCATC 2 cut(s) 158, 437
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 4 cut(s) 293, 794, 810, 843
BsaJI CCNNGG 5 cut(s) 11, 92, 404, 530, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 638
Bse1I ACTGG 2 cut(s) 117, 520
BseBI CCWGG 2 cut(s) 93, 532
BseDI CCNNGG 5 cut(s) 11, 92, 404, 530, 531
BseGI GGATG 2 cut(s) 397, 559
BseLI CCNNNNNNNGG 2 cut(s) 569, 638
BseNI ACTGG 2 cut(s) 117, 520
BseRI GAGGAG 2 cut(s) 395, 398
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 30, 216
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 331, 646
BshNI GGYRCC 1 cut(s) 352
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 569, 638
BsmAI GTCTC 3 cut(s) 53, 787, 824
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 331, 646
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 91, 466
Bsp143I GATC 3 cut(s) 69, 699, 882
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 5 cut(s) 41, 245, 332, 591, 676
BspANI GGCC 2 cut(s) 331, 646
BspHI TCATGA 1 cut(s) 893
BspLI GGNNCC 2 cut(s) 354, 841
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 117, 520
BssECI CCNNGG 5 cut(s) 11, 92, 404, 530, 531
BssMI GATC 3 cut(s) 69, 699, 882
BssT1I CCWWGG 2 cut(s) 11, 404
Bst2UI CCWGG 2 cut(s) 93, 532
Bst4CI ACNGT 2 cut(s) 357, 835
Bst6I CTCTTC 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 41, 426, 822
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 397, 559
BstKTI GATC 3 cut(s) 72, 702, 885
BstMAI GTCTC 3 cut(s) 53, 787, 824
BstMBI GATC 3 cut(s) 69, 699, 882
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 2 cut(s) 93, 532
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 91, 530
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 30, 216
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 331, 646
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 397, 559
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 3 cut(s) 110, 464, 513
Cac8I GCNNGC 3 cut(s) 41, 426, 822
CaiI CAGNNNCTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 32, 292, 329, 839
Csp6I GTAC 2 cut(s) 353, 809
CviAII CATG 7 cut(s) 24, 36, 405, 425, 587, 779, 894
CviJI RGCY 9 cut(s) 89, 229, 331, 409, 447, 646, 820, 857, 872
CviKI_1 RGCY 9 cut(s) 89, 229, 331, 409, 447, 646, 820, 857, 872
CviQI GTAC 2 cut(s) 353, 809
DpnI GATC 3 cut(s) 71, 701, 884
DpnII GATC 3 cut(s) 69, 699, 882
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 11, 404
Eco147I AGGCCT 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 32, 292, 839
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 91, 530
EcoT14I CCWWGG 2 cut(s) 11, 404
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 2 cut(s) 11, 404
FaeI CATG 7 cut(s) 27, 39, 408, 428, 590, 782, 897
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 234
FatI CATG 7 cut(s) 23, 35, 404, 424, 586, 778, 893
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 44, 230, 332
FokI GGATG 2 cut(s) 404, 546
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 3 cut(s) 44, 230, 332
FspBI CTAG 1 cut(s) 341
GluI GCNGC 3 cut(s) 44, 230, 332
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 331, 646
Hin1II CATG 7 cut(s) 27, 39, 408, 428, 590, 782, 897
HinfI GANTC 3 cut(s) 188, 306, 711
HphI GGTGA 2 cut(s) 28, 547
Hpy166II GTNNAC 2 cut(s) 32, 538
Hpy188I TCNGA 3 cut(s) 146, 370, 669
Hpy188III TCNNGA 7 cut(s) 56, 125, 310, 738, 827, 860, 894
Hpy8I GTNNAC 2 cut(s) 32, 538
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 357, 835
HpyCH4V TGCA 3 cut(s) 200, 428, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
Hsp92II CATG 7 cut(s) 27, 39, 408, 428, 590, 782, 897
KpnI GGTACC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 699, 882
LmnI GCTCC 3 cut(s) 86, 94, 678
Lsp1109I GCAGC 2 cut(s) 30, 216
LweI GCATC 2 cut(s) 158, 437
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 3 cut(s) 16, 580, 616
MalI GATC 3 cut(s) 71, 701, 884
MboI GATC 3 cut(s) 69, 699, 882
MboII GAAGA 4 cut(s) 113, 113, 490, 709
MhlI GDGCHC 2 cut(s) 91, 466
MluCI AATT 4 cut(s) 128, 281, 663, 744
MlyI GAGTC 2 cut(s) 197, 300
MmeI TCCRAC 3 cut(s) 575, 784, 817
MnlI CCTC 8 cut(s) 283, 373, 376, 474, 480, 636, 657, 709
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 2 cut(s) 747, 813
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 93, 532
MvaI CCWGG 2 cut(s) 93, 532
MwoI GCNNNNNNNGC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 404
NdeII GATC 3 cut(s) 69, 699, 882
NlaIII CATG 7 cut(s) 27, 39, 408, 428, 590, 782, 897
NlaIV GGNNCC 2 cut(s) 354, 841
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 428
NspV TTCGAA 1 cut(s) 451
PaeI GCATGC 1 cut(s) 428
PagI TCATGA 1 cut(s) 893
PasI CCCWGGG 1 cut(s) 531
PceI AGGCCT 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PfeI GAWTC 1 cut(s) 711
PkrI GCNGC 3 cut(s) 45, 231, 333
PleI GAGTC 2 cut(s) 196, 300
PpsI GAGTC 2 cut(s) 196, 300
PpuMI RGGWCCY 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 91, 530
PspGI CCWGG 2 cut(s) 91, 530
PspN4I GGNNCC 2 cut(s) 354, 841
PspPI GGNCC 4 cut(s) 32, 292, 329, 839
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 229
RsaI GTAC 2 cut(s) 354, 810
RsaNI GTAC 2 cut(s) 353, 809
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 747, 813
SatI GCNGC 3 cut(s) 44, 230, 332
Sau3AI GATC 3 cut(s) 69, 699, 882
Sau96I GGNCC 4 cut(s) 32, 292, 329, 839
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 2 cut(s) 197, 300
ScrFI CCNGG 2 cut(s) 93, 532
SduI GDGCHC 2 cut(s) 91, 466
SetI ASST 8 cut(s) 91, 231, 297, 449, 753, 822, 859, 874
SfaNI GCATC 2 cut(s) 158, 437
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 3 cut(s) 32, 292, 839
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 4 cut(s) 308, 773, 825, 858
SmoI CTYRAG 4 cut(s) 308, 773, 825, 858
SphI GCATGC 1 cut(s) 428
Sse9I AATT 4 cut(s) 128, 281, 663, 744
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 5 cut(s) 41, 245, 332, 591, 676
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 91, 530
StyI CCWWGG 2 cut(s) 11, 404
TaaI ACNGT 2 cut(s) 357, 835
TaqI TCGA 3 cut(s) 451, 502, 714
TaqII GACCGA 1 cut(s) 336
TasI AATT 4 cut(s) 128, 281, 663, 744
TatI WGTACW 1 cut(s) 808
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 1 cut(s) 711
Tru1I TTAA 2 cut(s) 747, 813
Tru9I TTAA 2 cut(s) 747, 813
TscAI CASTG 3 cut(s) 117, 471, 520
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 43, 229
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 4 cut(s) 17, 41, 491, 675
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 3 cut(s) 117, 471, 520
VpaK11BI GGWCC 3 cut(s) 32, 292, 839
XapI RAATTY 3 cut(s) 128, 281, 663
XceI RCATGY 1 cut(s) 428
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 810
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.