RchiOBHm_Chr4g0393201

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000592
Physical Location & Seq
Reverse (-)
8716931 .. 8718077
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36583

Sequence Viewer

Length: 354 bp
ATGCACGTCCCTTGGGTGACCTCATGGATTGGTGAAATACGCTCACTTTTTGTTCATATCGAGACTGATATAATTAGAGATGAAGTGGGAGCTCCTGGTAAGGATAAGCTGCCACAAGCAGCTGCGGTTGTCGTCAACTCTTTTGAAACAAAGGACTTGAAAGTTACTGAGGAACTGAAGAAAAGACTCCAAAAGTTTATCCTTGTTGGTCCACTACATCTTGTCCGGCCACTACAATTATTTGTATCAGATGATGAGGATCAGGAGCAGGAGCAGGATGTTAGGGTAGGAGCCCCAACCATGGTAAGATTGCAGAGAAAAACTAAGAGAATTAAACAAGAAGAAAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

117

Amino Acids

13.55

Weight (kDa)

8.03

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 146, 160
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 3 cut(s) 92, 109, 122
AluI AGCT 3 cut(s) 92, 109, 122
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 109, 119, 122
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 28, 44
AvaII GGWCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 94, 295
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 96, 109, 131
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 3 cut(s) 110, 120, 123
BlsI GCNGC 3 cut(s) 111, 121, 124
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 11, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 11, 300
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 96, 109, 131
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 94, 295
Bsp143I GATC 1 cut(s) 259
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 11, 300
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 11, 300
Bst2UI CCWGG 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 168, 324
BstDSI CCRYGG 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 96, 109, 131
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 2 cut(s) 24, 301
CviJI RGCY 5 cut(s) 92, 109, 122, 229, 293
CviKI_1 RGCY 5 cut(s) 92, 109, 122, 229, 293
DdeI CTNAG 2 cut(s) 168, 324
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 11, 300
Eco24I GRGCYC 2 cut(s) 94, 295
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 11, 300
EcoT38I GRGCYC 2 cut(s) 94, 295
ErhI CCWWGG 2 cut(s) 11, 300
FaeI CATG 2 cut(s) 27, 304
FaiI YATR 4 cut(s) 25, 57, 71, 302
FatI CATG 2 cut(s) 23, 300
Fnu4HI GCNGC 3 cut(s) 110, 120, 123
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 94, 295
Fsp4HI GCNGC 3 cut(s) 110, 120, 123
GluI GCNGC 3 cut(s) 110, 120, 123
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 226
Hin1II CATG 2 cut(s) 27, 304
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 186
HpaII CCGG 1 cut(s) 226
HphI GGTGA 2 cut(s) 28, 44
Hpy166II GTNNAC 2 cut(s) 136, 212
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 61, 263
Hpy8I GTNNAC 2 cut(s) 136, 212
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 4, 313
HpyF3I CTNAG 2 cut(s) 168, 324
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 27, 304
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 5 cut(s) 89, 97, 265, 271, 290
LpnPI CCDG 6 cut(s) 81, 108, 239, 248, 254, 260
Lsp1109I GCAGC 3 cut(s) 96, 109, 131
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 16, 163
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 2 cut(s) 190, 353
MhlI GDGCHC 2 cut(s) 94, 295
MluCI AATT 3 cut(s) 72, 236, 330
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 3 cut(s) 31, 163, 250
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 300
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 27, 304
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 16
PkrI GCNGC 3 cut(s) 111, 121, 124
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 16
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 110, 120, 123
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 94, 295
SetI ASST 5 cut(s) 9, 23, 94, 111, 124
SinI GGWCC 1 cut(s) 209
Sse9I AATT 3 cut(s) 72, 236, 330
SsiI CCGC 1 cut(s) 125
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 2 cut(s) 11, 300
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 72, 236, 330
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 3 cut(s) 109, 119, 122
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 44, 96
VpaK11BI GGWCC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.