Prupe.1G091100_v2.0.a1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000592
Physical Location & Seq
Reverse (-)
6860501 .. 6865871
5371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G091100.1

Sequence Viewer

Length: 1005 bp
ATGCAAAACCATGATGAAAGTATTAAAACTGAAACAGAAACTGCAATGCAGAGTCTGAGTAAAAATGCACCTAGTAAACATGAGGAACTAAAAGTCAAAACCATGATGAAATCGAGAGAGAAGGGAATGATGAGATCTGATTTTGGAGGTGGAAAACAGGCGCTTGACTTCCTTCCCGCATTTTCAAGATTTCAGATATGTGACTTACCGGATGGAGTAGTAACAGGGAACTTAGATTCACCCATAGCAACCCTGCTGCACAAAATGGGACAAAAACTGCTCAAAGCAACTGTTGTTGCGGTTAACTCTTTCGATGACGTAGACCCTGAAATTGAGAATGCGCTAAAGTCAAGGTTACAGAAGTTGCTCAACTATGGACCGCTGAGCCTAATATCAAGATCACCACATTCACCTGAAGACGAAAGTGGTTGCATAGAGTGGCTGGACAAGAGCAAGCCCGCATCTGTGGTATATATTGCCTTTGGAAGCGCGGCAACCCCACCACCTCATGAGCTAGAAGCCCTAGCTCAAGCATTGATTGAAACTGGGTTTCCATTTATTTGGTCATTTAGGGGCAACATAGAGGATTTCTTGCCCAAAGGGTGCAACAAAAGTAGCCTAAACGGGAAAATAGTTTCATGGGCTCCCCAAGTGCAGGTCTTAGGACATGCCTCAGTTGGGGTTTTTGTGACACATGCTGGGTGGAATTCGGTTATGGAGAGTATTTCAGGTGGGGTGCCTATGATTTGCAGGCCATTTTTTGGCGACCACACGCTCAACATGAGGACCATAGTGGCTGTTTGGGGAATTGGAACTGAGTTTGAGCGAGGGGTCATTACAAAAATTGGAATGGTGAAGGCCTTGGAACTTGTTTTGAAGCATAAAGAAGGAAAGGAAATGAGAGACAAAATCGGGGCCCTTAAAAATCTTGCTCTACAAGCGGTTGAATCTAATGGTAGCTCCAGCCAAGCTTTCAATAGCTTGGTGGACATTGTCACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

335

Amino Acids

36.42

Weight (kDa)

6.76

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 736
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 491
AciI CCGC 6 cut(s) 177, 299, 380, 459, 491, 941
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 655, 678, 761
AgsI TTSAA 5 cut(s) 186, 542, 877, 947, 976
AluBI AGCT 5 cut(s) 514, 527, 960, 971, 981
AluI AGCT 5 cut(s) 514, 527, 960, 971, 981
Alw26I GTCTC 1 cut(s) 897
AlwNI CAGNNNCTG 2 cut(s) 41, 55
AoxI GGCC 3 cut(s) 752, 858, 915
ApaI GGGCCC 1 cut(s) 919
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 706
AspLEI GCGC 3 cut(s) 163, 343, 491
AspS9I GGNCC 4 cut(s) 377, 786, 915, 916
AsuHPI GGTGA 5 cut(s) 231, 393, 402, 865, 988
AvaII GGWCC 2 cut(s) 377, 786
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 2 cut(s) 646, 919
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 3 cut(s) 72, 515, 524
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 646
BglII AGATCT 1 cut(s) 134
BisI GCNGC 2 cut(s) 257, 492
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 2 cut(s) 258, 493
Bme18I GGWCC 2 cut(s) 377, 786
BmgT120I GGNCC 4 cut(s) 377, 786, 915, 916
BmiI GGNNCC 4 cut(s) 645, 738, 916, 917
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 946
Bpu1102I GCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 861
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 655, 678, 761
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 861
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 655, 678, 761
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 4 cut(s) 47, 374, 687, 807
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 698
BsgI GTGCAG 2 cut(s) 242, 674
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 3 cut(s) 754, 860, 917
BshNI GGYRCC 1 cut(s) 736
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 655, 678, 761
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 3 cut(s) 754, 860, 917
Bsp120I GGGCCC 1 cut(s) 915
Bsp1286I GDGCHC 2 cut(s) 646, 919
Bsp143I GATC 2 cut(s) 134, 398
Bsp1720I GCTNAGC 1 cut(s) 383
BspACI CCGC 6 cut(s) 177, 299, 380, 459, 491, 941
BspANI GGCC 3 cut(s) 754, 860, 917
BspCNI CTCAG 4 cut(s) 48, 375, 686, 808
BspFNI CGCG 1 cut(s) 491
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 4 cut(s) 645, 738, 916, 917
BspMI ACCTGC 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 861
BssMI GATC 2 cut(s) 134, 398
BssT1I CCWWGG 1 cut(s) 861
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 455, 459, 752
BstDEI CTNAG 6 cut(s) 56, 232, 383, 661, 673, 816
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 491
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 3 cut(s) 163, 343, 491
BstKTI GATC 2 cut(s) 137, 401
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 2 cut(s) 134, 398
BstMWI GCNNNNNNNGC 1 cut(s) 938
BstNSI RCATGY 2 cut(s) 671, 698
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 134
BstXI CCANNNNNNTGG 1 cut(s) 561
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 3 cut(s) 754, 860, 917
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 3 cut(s) 455, 459, 752
CaiI CAGNNNCTG 2 cut(s) 41, 55
CciI TCATGA 1 cut(s) 508
CfoI GCGC 3 cut(s) 163, 343, 491
Cfr13I GGNCC 4 cut(s) 377, 786, 915, 916
CviAII CATG 8 cut(s) 11, 80, 103, 509, 639, 668, 695, 781
DdeI CTNAG 6 cut(s) 56, 232, 383, 661, 673, 816
DpnI GATC 2 cut(s) 136, 400
DpnII GATC 2 cut(s) 134, 398
Eco130I CCWWGG 1 cut(s) 861
Eco147I AGGCCT 1 cut(s) 860
Eco24I GRGCYC 2 cut(s) 646, 919
Eco47I GGWCC 2 cut(s) 377, 786
Eco57I CTGAAG 1 cut(s) 435
EcoO109I RGGNCCY 2 cut(s) 915, 916
EcoRI GAATTC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 861
EcoT38I GRGCYC 2 cut(s) 646, 919
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 8 cut(s) 14, 83, 106, 512, 642, 671, 698, 784
FaqI GGGAC 1 cut(s) 282
FatI CATG 8 cut(s) 10, 79, 102, 508, 638, 667, 694, 780
FauI CCCGC 2 cut(s) 184, 466
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 257, 492
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 2 cut(s) 646, 919
Fsp4HI GCNGC 2 cut(s) 257, 492
FspBI CTAG 3 cut(s) 72, 515, 524
GlaI GCGC 3 cut(s) 162, 342, 490
GluI GCNGC 2 cut(s) 257, 492
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 946
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 754, 860, 917
HapII CCGG 1 cut(s) 209
HhaI GCGC 3 cut(s) 163, 343, 491
Hin1II CATG 8 cut(s) 14, 83, 106, 512, 642, 671, 698, 784
Hin6I GCGC 3 cut(s) 161, 341, 489
HinP1I GCGC 3 cut(s) 161, 341, 489
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 3 cut(s) 52, 236, 947
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 209
HphI GGTGA 5 cut(s) 231, 393, 402, 865, 988
Hpy166II GTNNAC 4 cut(s) 77, 304, 322, 988
Hpy188I TCNGA 3 cut(s) 57, 139, 195
Hpy188III TCNNGA 4 cut(s) 114, 186, 396, 509
Hpy8I GTNNAC 4 cut(s) 77, 304, 322, 988
HpyAV CCTTC 4 cut(s) 115, 182, 850, 881
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 9 cut(s) 4, 44, 49, 68, 259, 432, 606, 655, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 938
HpyF3I CTNAG 6 cut(s) 56, 232, 383, 661, 673, 816
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 8 cut(s) 14, 83, 106, 512, 642, 671, 698, 784
HspAI GCGC 3 cut(s) 161, 341, 489
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 2 cut(s) 134, 398
LmnI GCTCC 2 cut(s) 649, 965
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 470
MaeI CTAG 3 cut(s) 72, 515, 524
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 5 cut(s) 200, 220, 354, 688, 994
MalI GATC 2 cut(s) 136, 400
MboI GATC 2 cut(s) 134, 398
MboII GAAGA 1 cut(s) 428
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 646, 919
MluCI AATT 4 cut(s) 330, 706, 807, 843
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 7 cut(s) 76, 140, 516, 577, 682, 777, 821
MseI TTAA 3 cut(s) 24, 303, 921
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 343
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 938
NdeII GATC 2 cut(s) 134, 398
NlaIII CATG 8 cut(s) 14, 83, 106, 512, 642, 671, 698, 784
NlaIV GGNNCC 4 cut(s) 645, 738, 916, 917
NmuCI GTSAC 3 cut(s) 200, 688, 994
NspI RCATGY 2 cut(s) 671, 698
PagI TCATGA 1 cut(s) 508
PceI AGGCCT 1 cut(s) 860
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 236, 947
PflFI GACNNNGTC 1 cut(s) 992
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 2 cut(s) 258, 493
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 698
PspN4I GGNNCC 4 cut(s) 645, 738, 916, 917
PspOMI GGGCCC 1 cut(s) 915
PspPI GGNCC 4 cut(s) 377, 786, 915, 916
PstNI CAGNNNCTG 2 cut(s) 41, 55
PsuI RGATCY 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 992
SaqAI TTAA 3 cut(s) 24, 303, 921
SatI GCNGC 2 cut(s) 257, 492
Sau3AI GATC 2 cut(s) 134, 398
Sau96I GGNCC 4 cut(s) 377, 786, 915, 916
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 646, 919
SfaNI GCATC 1 cut(s) 470
SinI GGWCC 2 cut(s) 377, 786
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 330, 706, 807, 843
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 6 cut(s) 177, 299, 380, 459, 491, 941
SspMI CTAG 3 cut(s) 72, 515, 524
StuI AGGCCT 1 cut(s) 860
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 113, 312
TasI AATT 4 cut(s) 330, 706, 807, 843
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 2 cut(s) 236, 947
Tru1I TTAA 3 cut(s) 24, 303, 921
Tru9I TTAA 3 cut(s) 24, 303, 921
TseFI GTSAC 3 cut(s) 200, 688, 994
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 3 cut(s) 200, 688, 994
TspDTI ATGAA 3 cut(s) 30, 122, 627
Tth111I GACNNNGTC 1 cut(s) 992
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 377, 786
XapI RAATTY 1 cut(s) 706
XceI RCATGY 2 cut(s) 671, 698
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 3 cut(s) 72, 515, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.