Rmu_co8283697.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8283697.1
OG0000592
Physical Location & Seq
Forward (+)
2 .. 754
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8283697.1_g000001.1.cds

Sequence Viewer

Length: 753 bp
atgggacagaagctgccacaagcaactgcggttgccgtcaactcttttgaaacaatggacttgaaagttgccgaggagctaaagaagagactcaagaagttgctccttgttgggccactacatctagtccggccggtaccatcagcacaatcagatgatgacgaggaggagaaagatgtatgcttaccgtggctggacaaccacaagcctgcatcagtagcatacatcagctttggaagtgtgggagcactgcccgcaatagaggtagcagcattagccgaggcattagaggaggggggattcccatttctttggtcatttaggggaaacctagaggactttcccaaaggatttatcgaaagaacatcaactggaaaagttgttccctgggtgaaccaagtgcaaatcctaaaccatccgtcgataggggtgtttgttacacatggcggttggaatgatgttttggagagtgtaacttgtggtgtgcctatggttgggaggcctcatattgatgatcaaacgctgaatatgcagaccgtagaagttgtatggaagatcggtatgagaatcgagggtggcgttttcactaaatatggagcaatcaaggtattggaacaagctctatcgcttgagcgaggaaaagaaatgagacacagagttggagtccttaaacagcttgctcaagaggctgttggacccaatgggagttcaactcaggacttgaaagctctggtggagatcatcaaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

250

Amino Acids

27.36

Weight (kDa)

5.73

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 3 cut(s) 29, 255, 447
AcoI YGGCCR 1 cut(s) 131
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 425, 494
AgsI TTSAA 4 cut(s) 50, 64, 711, 724
AjnI CCWGG 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 6 cut(s) 13, 79, 231, 620, 676, 728
AluI AGCT 6 cut(s) 13, 79, 231, 620, 676, 728
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 82, 643
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 3 cut(s) 113, 131, 500
ApeKI GCWGC 2 cut(s) 13, 269
Asp718I GGTACC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 113, 695
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 1 cut(s) 695
BanI GGYRCC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 281
BccI CCATC 2 cut(s) 148, 423
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 388
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 2 cut(s) 82, 643
BfaI CTAG 2 cut(s) 125, 332
BisI GCNGC 2 cut(s) 14, 270
BlsI GCNGC 2 cut(s) 15, 271
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 2 cut(s) 113, 695
BmiI GGNNCC 2 cut(s) 138, 697
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 697, 729
BpuEI CTTGAG 3 cut(s) 77, 650, 666
BsaJI CCNNGG 5 cut(s) 72, 188, 279, 386, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 494
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 5 cut(s) 72, 188, 279, 386, 387
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 425, 494
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 4 cut(s) 89, 179, 182, 305
BseX3I CGGCCG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 115, 133, 502
BshNI GGYRCC 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 130, 134
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 425, 494
BsmAI GTCTC 2 cut(s) 82, 643
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 115, 133, 502
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 514, 555, 738
BspACI CCGC 3 cut(s) 29, 255, 447
BspANI GGCC 3 cut(s) 115, 133, 502
BspCNI CTCAG 1 cut(s) 727
BspHI TCATGA 1 cut(s) 749
BspLI GGNNCC 2 cut(s) 138, 697
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 5 cut(s) 72, 188, 279, 386, 387
BssMI GATC 3 cut(s) 514, 555, 738
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 189, 538
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 210, 255, 678
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 415
BstKTI GATC 3 cut(s) 517, 558, 741
BstMAI GTCTC 2 cut(s) 82, 643
BstMBI GATC 3 cut(s) 514, 555, 738
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 5 cut(s) 218, 254, 275, 529, 686
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 312
BstZI CGGCCG 1 cut(s) 131
BsuRI GGCC 3 cut(s) 115, 133, 502
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 210, 255, 678
CaiI CAGNNNCTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 749
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 113, 695
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 443, 750
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 714
DpnI GATC 3 cut(s) 516, 557, 740
DpnII GATC 3 cut(s) 514, 555, 738
EaeI YGGCCR 1 cut(s) 131
EagI CGGCCG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EclXI CGGCCG 1 cut(s) 131
Eco147I AGGCCT 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 695
Eco52I CGGCCG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 386
FaeI CATG 2 cut(s) 446, 753
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 442, 749
FauI CCCGC 1 cut(s) 262
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 14, 270
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 14, 270
FspBI CTAG 2 cut(s) 125, 332
GluI GCNGC 2 cut(s) 14, 270
HaeIII GGCC 3 cut(s) 115, 133, 502
HapII CCGG 2 cut(s) 130, 134
Hin1II CATG 2 cut(s) 446, 753
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 4 cut(s) 90, 300, 567, 663
HpaII CCGG 2 cut(s) 130, 134
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 40, 394
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 4 cut(s) 94, 683, 716, 750
Hpy8I GTNNAC 2 cut(s) 40, 394
Hpy99I CGWCG 1 cut(s) 424
HpyCH4III ACNGT 2 cut(s) 189, 538
HpyCH4V TGCA 3 cut(s) 212, 403, 532
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 254, 275, 529, 686
HpyF3I CTNAG 1 cut(s) 714
Hsp92II CATG 2 cut(s) 446, 753
KpnI GGTACC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 514, 555, 738
LmnI GCTCC 4 cut(s) 76, 108, 245, 596
LpnPI CCDG 9 cut(s) 143, 147, 179, 222, 357, 373, 400, 701, 716
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 125, 332
MaeIII GTNAC 2 cut(s) 436, 472
MalI GATC 3 cut(s) 516, 557, 740
MboI GATC 3 cut(s) 514, 555, 738
MboII GAAGA 2 cut(s) 97, 565
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 2 cut(s) 84, 672
MmeI TCCRAC 3 cut(s) 431, 640, 673
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 2 cut(s) 130, 134
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 5 cut(s) 218, 254, 275, 529, 686
NdeII GATC 3 cut(s) 514, 555, 738
NlaIII CATG 2 cut(s) 446, 753
NlaIV GGNNCC 2 cut(s) 138, 697
NmeAIII GCCGAG 2 cut(s) 97, 304
PagI TCATGA 1 cut(s) 749
PasI CCCWGGG 1 cut(s) 387
PceI AGGCCT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PfeI GAWTC 2 cut(s) 300, 567
PkrI GCNGC 2 cut(s) 15, 271
PleI GAGTC 2 cut(s) 84, 671
PpsI GAGTC 2 cut(s) 84, 671
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 2 cut(s) 138, 697
PspPI GGNCC 2 cut(s) 113, 695
PstNI CAGNNNCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 2 cut(s) 14, 270
Sau3AI GATC 3 cut(s) 514, 555, 738
Sau96I GGNCC 2 cut(s) 113, 695
SchI GAGTC 2 cut(s) 84, 672
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 1 cut(s) 250
SetI ASST 9 cut(s) 15, 81, 233, 267, 333, 609, 622, 678, 730
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 3 cut(s) 92, 629, 681
SmoI CTYRAG 3 cut(s) 92, 629, 681
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 3 cut(s) 29, 255, 447
SspMI CTAG 2 cut(s) 125, 332
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 189, 538
TaqI TCGA 3 cut(s) 357, 422, 570
TfiI GAWTC 2 cut(s) 300, 567
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 13, 269
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 695
XspI CTAG 2 cut(s) 125, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.