Rmu_sc0004828.1_g000007

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004828.1
Physical Location & Seq
Forward (+)
29245 .. 30742
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004828.1_g000007.1.cds

Sequence Viewer

Length: 1344 bp
atgagccacaaagttgctagttctagtcctcaaaatgttgcagtcttagtttttccattcgcctcccatcccggctctcttctccgatttgtacgttcgatttcaactgtggccccagacatgcagttcaccttcttcaacacatctagatcaaatagctccctcttctcgagttccggcaaaaaggattgtggtaatgtaaagccatacaacgtatgggatggcttgccagatgactacatacccctctccagaaatccgctgcagcaaattgagttgttccttgacaatgcacttggtagcttcgagaaggcaatcaaagaggtggaggctgaaacaggacacaagttcggctgcttgatttcagatgcattcctctggtttgccggtgacatagccgaaaagatgcacgtctcttgggtgcccttatggatctgtggacaacgttcactgcttgttcatattgagactgatataattagagaaaaagtgggagctcttgatcagtttcgagcatgtgacttatccaaggaagctttatttggagacatagaatccccatttacaaaaatgctgtataaaatgggacagaagctgccacaagcaactgtggttgtcatcaactctattgaaaatatggacttcacagttactgaggagctgaagaaaagactccagaagttgctccttgttgggccactacatcttatacggccagtaccatcagttatatcagatgatgaggaggaagagaaagatgtctgcttacagtggttggacaaccaccggcctgcgtcagtagcatacattagctttggaagtctgggggcactgccgccaatggaggtagcagcattagctgaggcattagaggaaggtggattcccctttctttggtcatttaggggaaatcaagaggactttccacaaggatttatcgaaaggacaaacaggttatccataggaaaagtagttccatgggtgaaccaagaacaaatcctaaatcatacctcgataggagtgcatgtaacacattgcggttggaattcaattttagagagtgtaacttgtagtgttcctctgattgggaggcctgattttgctgaccaacacataaatatgcggagcgtagaagttgtatggaagatcggtgtgagaattgagggaggcgttttcactaaaagcggagcagtcaaggcattggagcaagttttattgcttgaacaaggaaaacaaatgagacatagagttggagtccttaagcagcttgctcaagaggctgttggaccaaatgggcgttcagctcaagacttgaaagctttggtagagatcatcaaaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

49.7

Weight (kDa)

5.88

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 5 cut(s) 260, 836, 1038, 1123, 1185
AclI AACGTT 1 cut(s) 445
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 1 cut(s) 1045
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 2 cut(s) 93, 720
AfiI CCNNNNNNNGG 2 cut(s) 894, 1085
AflII CTTAAG 1 cut(s) 1259
AgsI TTSAA 6 cut(s) 105, 139, 632, 1050, 1223, 1315
AjiI CACGTC 1 cut(s) 412
AjuI GAANNNNNNNTTGG 4 cut(s) 525, 557, 1282, 1314
AloI GAACNNNNNNTCC 2 cut(s) 957, 989
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 4 cut(s) 418, 461, 540, 1234
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 2 cut(s) 595, 653
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 5 cut(s) 111, 695, 713, 788, 1091
ApeKI GCWGC 6 cut(s) 262, 265, 354, 595, 851, 1264
ApoI RAATTY 1 cut(s) 1045
AspS9I GGNCC 3 cut(s) 112, 695, 1286
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 121, 401, 994
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 1286
BaeGI GKGCMC 2 cut(s) 426, 832
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 6 cut(s) 249, 277, 341, 582, 863, 1276
BccI CCATC 3 cut(s) 75, 215, 730
BceAI ACGGC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 1003, 1037
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 418, 461, 540, 1234
BfaI CTAG 3 cut(s) 18, 24, 147
BfmI CTRYAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 1259
BisI GCNGC 7 cut(s) 263, 266, 355, 596, 836, 852, 1265
BlsI GCNGC 7 cut(s) 264, 267, 356, 597, 837, 853, 1266
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 1286
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 112, 695, 1286
BmiI GGNNCC 2 cut(s) 114, 423
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 358, 396
BpmI CTGGAG 2 cut(s) 235, 659
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 2 cut(s) 1257, 1290
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 528, 977
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 894, 1085
Bse118I RCCGGY 2 cut(s) 386, 786
Bse1I ACTGG 1 cut(s) 716
Bse3DI GCAATG 1 cut(s) 1033
BseDI CCNNGG 2 cut(s) 528, 977
BseGI GGATG 2 cut(s) 67, 226
BseLI CCNNNNNNNGG 2 cut(s) 894, 1085
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 2 cut(s) 645, 852
BseNI ACTGG 1 cut(s) 716
BseRI GAGGAG 2 cut(s) 671, 758
BseSI GKGCMC 2 cut(s) 426, 832
BseXI GCAGC 6 cut(s) 249, 277, 341, 582, 863, 1276
BshFI GGCC 5 cut(s) 113, 697, 715, 790, 1093
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 4 cut(s) 72, 177, 387, 787
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 894, 1085
BsmAI GTCTC 4 cut(s) 418, 461, 540, 1234
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 600
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 5 cut(s) 113, 697, 715, 790, 1093
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 3 cut(s) 426, 499, 832
Bsp143I GATC 5 cut(s) 149, 432, 502, 1146, 1329
Bsp19I CCATGG 1 cut(s) 977
BspACI CCGC 5 cut(s) 260, 836, 1038, 1123, 1185
BspANI GGCC 5 cut(s) 113, 697, 715, 790, 1093
BspCNI CTCAG 2 cut(s) 646, 853
BspLI GGNNCC 2 cut(s) 114, 423
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 1259
BsrDI GCAATG 1 cut(s) 1033
BsrFI RCCGGY 2 cut(s) 386, 786
BsrI ACTGG 1 cut(s) 716
BssAI RCCGGY 2 cut(s) 386, 786
BssECI CCNNGG 2 cut(s) 528, 977
BssMI GATC 5 cut(s) 149, 432, 502, 1146, 1329
BssT1I CCWWGG 2 cut(s) 528, 977
Bst4CI ACNGT 4 cut(s) 109, 610, 649, 771
Bst6I CTCTTC 3 cut(s) 84, 170, 744
BstAFI CTTAAG 1 cut(s) 1259
BstC8I GCNNGC 3 cut(s) 227, 792, 1269
BstDEI CTNAG 3 cut(s) 46, 654, 861
BstDSI CCRYGG 1 cut(s) 977
BstF5I GGATG 2 cut(s) 67, 226
BstKTI GATC 5 cut(s) 152, 435, 505, 1149, 1332
BstMAI GTCTC 4 cut(s) 418, 461, 540, 1234
BstMBI GATC 5 cut(s) 149, 432, 502, 1146, 1329
BstMWI GCNNNNNNNGC 4 cut(s) 800, 857, 1196, 1277
BstNSI RCATGY 3 cut(s) 124, 519, 1028
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 2 cut(s) 426, 832
BstV1I GCAGC 6 cut(s) 249, 277, 341, 582, 863, 1276
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 5 cut(s) 113, 697, 715, 790, 1093
BtgI CCRYGG 1 cut(s) 977
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 226
BtsI GCAGTG 2 cut(s) 449, 830
BtsIMutI CAGTG 3 cut(s) 449, 776, 830
Cac8I GCNNGC 3 cut(s) 227, 792, 1269
CaiI CAGNNNCTG 2 cut(s) 595, 653
Cfr10I RCCGGY 2 cut(s) 386, 786
Cfr13I GGNCC 3 cut(s) 112, 695, 1286
CseI GACGC 1 cut(s) 783
Csp6I GTAC 2 cut(s) 92, 719
CviAII CATG 4 cut(s) 121, 516, 978, 1025
CviQI GTAC 2 cut(s) 92, 719
DdeI CTNAG 3 cut(s) 46, 654, 861
DpnI GATC 5 cut(s) 151, 434, 504, 1148, 1331
DpnII GATC 5 cut(s) 149, 432, 502, 1146, 1329
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 3 cut(s) 84, 170, 744
EarI CTCTTC 3 cut(s) 84, 170, 744
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 528, 977
Eco147I AGGCCT 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 1286
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1045
EcoT14I CCWWGG 2 cut(s) 528, 977
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 528, 977
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 4 cut(s) 124, 519, 981, 1028
FaqI GGGAC 1 cut(s) 600
FatI CATG 4 cut(s) 120, 515, 977, 1024
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 7 cut(s) 263, 266, 355, 596, 836, 852, 1265
FokI GGATG 2 cut(s) 54, 233
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 7 cut(s) 263, 266, 355, 596, 836, 852, 1265
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 7 cut(s) 263, 266, 355, 596, 836, 852, 1265
GsuI CTGGAG 2 cut(s) 235, 659
HaeIII GGCC 5 cut(s) 113, 697, 715, 790, 1093
HapII CCGG 4 cut(s) 72, 177, 387, 787
HgaI GACGC 1 cut(s) 783
Hin1II CATG 4 cut(s) 124, 519, 981, 1028
HindIII AAGCTT 2 cut(s) 534, 1317
HinfI GANTC 4 cut(s) 554, 672, 882, 1254
HpaII CCGG 4 cut(s) 72, 177, 387, 787
HphI GGTGA 3 cut(s) 121, 401, 994
Hpy166II GTNNAC 4 cut(s) 129, 440, 449, 985
Hpy188I TCNGA 4 cut(s) 86, 367, 736, 1083
Hpy188III TCNNGA 9 cut(s) 147, 169, 252, 307, 500, 676, 914, 1274, 1307
Hpy8I GTNNAC 4 cut(s) 129, 440, 449, 985
HpyAV CCTTC 3 cut(s) 142, 304, 869
HpyCH4III ACNGT 4 cut(s) 109, 610, 649, 771
HpyCH4IV ACGT 4 cut(s) 94, 213, 411, 445
HpyCH4V TGCA 7 cut(s) 41, 124, 265, 293, 371, 409, 1024
HpyF10VI GCNNNNNNNGC 4 cut(s) 800, 857, 1196, 1277
HpyF3I CTNAG 3 cut(s) 46, 654, 861
HpySE526I ACGT 4 cut(s) 94, 213, 411, 445
Hsp92II CATG 4 cut(s) 124, 519, 981, 1028
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 149, 432, 502, 1146, 1329
LmnI GCTCC 7 cut(s) 164, 494, 658, 690, 1125, 1187, 1204
Lsp1109I GCAGC 6 cut(s) 249, 277, 341, 582, 863, 1276
LweI GCATC 2 cut(s) 358, 396
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 411, 445
MaeIII GTNAC 5 cut(s) 389, 518, 649, 1027, 1063
MalI GATC 5 cut(s) 151, 434, 504, 1148, 1331
MboI GATC 5 cut(s) 149, 432, 502, 1146, 1329
MboII GAAGA 6 cut(s) 71, 127, 157, 676, 761, 1156
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 3 cut(s) 426, 499, 832
MluCI AATT 5 cut(s) 270, 477, 1045, 1050, 1158
MlyI GAGTC 2 cut(s) 666, 1263
MmeI TCCRAC 4 cut(s) 756, 1022, 1231, 1264
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 1260
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 1259
MspI CCGG 4 cut(s) 72, 177, 387, 787
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 800, 857, 1196, 1277
NciI CCSGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 977
NdeII GATC 5 cut(s) 149, 432, 502, 1146, 1329
NlaIII CATG 4 cut(s) 124, 519, 981, 1028
NlaIV GGNNCC 2 cut(s) 114, 423
NmuCI GTSAC 2 cut(s) 389, 518
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 3 cut(s) 124, 519, 1028
PaeR7I CTCGAG 1 cut(s) 169
PceI AGGCCT 1 cut(s) 1093
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 554, 882
PkrI GCNGC 7 cut(s) 264, 267, 356, 597, 837, 853, 1266
PleI GAGTC 2 cut(s) 666, 1262
PpsI GAGTC 2 cut(s) 666, 1262
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 114, 423
PspPI GGNCC 3 cut(s) 112, 695, 1286
PstI CTGCAG 1 cut(s) 267
PstNI CAGNNNCTG 2 cut(s) 595, 653
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 2 cut(s) 93, 720
RsaNI GTAC 2 cut(s) 92, 719
RseI CAYNNNNRTG 1 cut(s) 1118
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 1260
SatI GCNGC 7 cut(s) 263, 266, 355, 596, 836, 852, 1265
Sau3AI GATC 5 cut(s) 149, 432, 502, 1146, 1329
Sau96I GGNCC 3 cut(s) 112, 695, 1286
SchI GAGTC 2 cut(s) 666, 1263
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 3 cut(s) 426, 499, 832
SfaNI GCATC 2 cut(s) 358, 396
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 1286
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 4 cut(s) 169, 1259, 1272, 1305
SmoI CTYRAG 4 cut(s) 169, 1259, 1272, 1305
Sse9I AATT 5 cut(s) 270, 477, 1045, 1050, 1158
SseBI AGGCCT 1 cut(s) 1093
SsiI CCGC 5 cut(s) 260, 836, 1038, 1123, 1185
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 1093
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 2 cut(s) 528, 977
TaaI ACNGT 4 cut(s) 109, 610, 649, 771
TaiI ACGT 4 cut(s) 97, 216, 414, 448
TaqI TCGA 6 cut(s) 98, 170, 306, 511, 939, 1013
TasI AATT 5 cut(s) 270, 477, 1045, 1050, 1158
TauI GCSGC 1 cut(s) 838
TfiI GAWTC 2 cut(s) 554, 882
Tru1I TTAA 1 cut(s) 1260
Tru9I TTAA 1 cut(s) 1260
TscAI CASTG 3 cut(s) 456, 776, 837
TseFI GTSAC 2 cut(s) 389, 518
TseI GCWGC 6 cut(s) 262, 265, 354, 595, 851, 1264
Tsp45I GTSAC 2 cut(s) 389, 518
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 3 cut(s) 456, 776, 837
Vha464I CTTAAG 1 cut(s) 1259
VpaK11BI GGWCC 1 cut(s) 1286
XapI RAATTY 1 cut(s) 1045
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 3 cut(s) 124, 519, 1028
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 3 cut(s) 18, 24, 147
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.