Rh4AG045600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000592
Physical Location & Seq
Reverse (-)
9584373 .. 9588294
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG045600.1

Sequence Viewer

Length: 903 bp
ATGAGCCACAAACTTGCTAGTTTTAATCCTCAATCCCCTGTGGCAGTTTTAAATTTTCCATTCGCCTTCCATCCCAACTCTCTTCTCCGATTTATACGAACCATTTCGGCCATTGCCCCGGACATTAAGTTCACCTTCTTCAGCACTTGTAGAACAAATAGCTCCCTCTTCTCGGTTTCCAACAACAAGGGCTTGGATAATGTAAAGCCTTACAATGTATGGGATGGCTTGCCGGAGGGTTACGTGCCCCCATCTGGACCTCCGCTGGAGCAAATTGGGTTGTTCCTTGACAAGGCACCTCAAAGCTTTGAGAGGGCACTCAAAGAAGTGGAGGCTGAAACAGGACACAAGTTCGGCTGCTTGATTTCAGATGCATTTCTCTGGTTTTCCGGGGACATTGCCCAGAAAATGAACGTCCCTTGGGTGACTACATGGAGCGGACCACGCTCGCTGCTTGTTCATATGGAGACTGATATGATCAGAGAAAAAGTGGGAGCTCCTGGGCAAGAAGACAAGACCCTGGACTTCCTTCTAGGATTCTCAAATGAGTTCCGAGCATCTGACTTATCGAAGGAAGTTGTATTTGGAAACATAGAGTCCCCACTTGCAAATATGTTGCATAAAATGGGACAGAAGCTGCCACAAGCAACTGCGGTTGCCGTCAACTCTTTTGAAACAATGGACTTGAAAGTTGCCGAGGAGCTAAAGAAGAGACTCAAGAAGTTGCTCCTTGTTGGGCCACTACATCTAGTCCGGCCGGTACCATCAGCACAATCAGATGATGACGAGGAGGAGAAAGATGAAAATGGGGCTGAAGGTGTTGATTTCATTGCTGTATCTTTTGTCAAGTCTGCTGAAGTGATCAATCACCTTAAAAGCTATATTGCAGCACGGTCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

300

Amino Acids

33.28

Weight (kDa)

5.85

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 295, 760
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 3 cut(s) 263, 438, 653
AcoI YGGCCR 2 cut(s) 108, 755
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 3 cut(s) 124, 834, 876
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 3 cut(s) 172, 254, 292
AgsI TTSAA 2 cut(s) 674, 688
AjnI CCWGG 2 cut(s) 499, 519
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 162, 306, 497, 637, 703, 879
AluI AGCT 6 cut(s) 162, 306, 497, 637, 703, 879
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 461, 706
AlwNI CAGNNNCTG 1 cut(s) 637
AoxI GGCC 3 cut(s) 108, 737, 755
ApeKI GCWGC 4 cut(s) 357, 451, 637, 887
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 103
Asp718I GGTACC 1 cut(s) 760
AspS9I GGNCC 3 cut(s) 257, 440, 737
AsuC2I CCSGG 2 cut(s) 119, 391
AsuHPI GGTGA 3 cut(s) 124, 436, 860
AvaII GGWCC 2 cut(s) 257, 440
BaeGI GKGCMC 2 cut(s) 249, 319
BanI GGYRCC 2 cut(s) 295, 760
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 4 cut(s) 344, 438, 624, 899
BccI CCATC 4 cut(s) 78, 218, 259, 772
BceAI ACGGC 1 cut(s) 644
BciT130I CCWGG 2 cut(s) 501, 521
BclI TGATCA 2 cut(s) 477, 861
BcnI CCSGG 2 cut(s) 119, 391
BcoDI GTCTC 2 cut(s) 461, 706
BfaI CTAG 3 cut(s) 18, 533, 749
BisI GCNGC 4 cut(s) 358, 452, 638, 888
BlsI GCNGC 4 cut(s) 359, 453, 639, 889
Bme1390I CCNGG 4 cut(s) 119, 391, 501, 521
Bme18I GGWCC 2 cut(s) 257, 440
BmgT120I GGNCC 3 cut(s) 257, 440, 737
BmiI GGNNCC 2 cut(s) 297, 762
BmrFI CCNGG 4 cut(s) 119, 391, 501, 521
BmsI GCATC 2 cut(s) 361, 566
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 2 cut(s) 119, 391
BsaAI YACGTR 1 cut(s) 244
BsaJI CCNNGG 6 cut(s) 117, 390, 419, 500, 519, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 254, 292
Bse118I RCCGGY 1 cut(s) 757
Bse3DI GCAATG 3 cut(s) 111, 396, 828
BseBI CCWGG 2 cut(s) 501, 521
BseDI CCNNGG 6 cut(s) 117, 390, 419, 500, 519, 696
BseGI GGATG 2 cut(s) 70, 229
BseLI CCNNNNNNNGG 3 cut(s) 172, 254, 292
BseMI GCAATG 3 cut(s) 111, 396, 828
BseRI GAGGAG 3 cut(s) 713, 803, 806
BseSI GKGCMC 2 cut(s) 249, 319
BseX3I CGGCCG 1 cut(s) 755
BseXI GCAGC 4 cut(s) 344, 438, 624, 899
Bsh1285I CGRYCG 1 cut(s) 758
BshFI GGCC 3 cut(s) 110, 739, 757
BshNI GGYRCC 2 cut(s) 295, 760
BsiEI CGRYCG 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 5 cut(s) 119, 233, 390, 754, 758
BslFI GGGAC 4 cut(s) 401, 407, 583, 642
BslI CCNNNNNNNGG 3 cut(s) 172, 254, 292
BsmAI GTCTC 2 cut(s) 461, 706
BsmFI GGGAC 4 cut(s) 401, 407, 583, 642
BsnI GGCC 3 cut(s) 110, 739, 757
Bsp1286I GDGCHC 3 cut(s) 249, 319, 499
Bsp143I GATC 2 cut(s) 477, 861
BspACI CCGC 3 cut(s) 263, 438, 653
BspANI GGCC 3 cut(s) 110, 739, 757
BspLI GGNNCC 2 cut(s) 297, 762
BspT107I GGYRCC 2 cut(s) 295, 760
BsrBI CCGCTC 1 cut(s) 438
BsrDI GCAATG 3 cut(s) 111, 396, 828
BsrFI RCCGGY 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 757
BssECI CCNNGG 6 cut(s) 117, 390, 419, 500, 519, 696
BssMI GATC 2 cut(s) 477, 861
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 501, 521
Bst4CI ACNGT 1 cut(s) 894
Bst6I CTCTTC 3 cut(s) 87, 173, 704
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 230, 449
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 70, 229
BstKTI GATC 2 cut(s) 480, 864
BstMAI GTCTC 2 cut(s) 461, 706
BstMBI GATC 2 cut(s) 477, 861
BstMCI CGRYCG 1 cut(s) 758
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 2 cut(s) 501, 521
BstSCI CCNGG 4 cut(s) 117, 389, 499, 519
BstSLI GKGCMC 2 cut(s) 249, 319
BstV1I GCAGC 4 cut(s) 344, 438, 624, 899
BstV2I GAAGAC 1 cut(s) 516
BstZI CGGCCG 1 cut(s) 755
BsuRI GGCC 3 cut(s) 110, 739, 757
BtsCI GGATG 2 cut(s) 70, 229
Cac8I GCNNGC 2 cut(s) 230, 449
CaiI CAGNNNCTG 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 757
Cfr13I GGNCC 3 cut(s) 257, 440, 737
Csp6I GTAC 1 cut(s) 761
CviAII CATG 1 cut(s) 432
CviQI GTAC 1 cut(s) 761
DpnI GATC 2 cut(s) 479, 863
DpnII GATC 2 cut(s) 477, 861
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 108, 755
EagI CGGCCG 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 87, 173, 704
EarI CTCTTC 3 cut(s) 87, 173, 704
Ecl136II GAGCTC 1 cut(s) 497
EclXI CGGCCG 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 257, 440
Eco52I CGGCCG 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 3 cut(s) 124, 834, 876
EcoICRI GAGCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 499, 519
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 435
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 4 cut(s) 401, 407, 583, 642
FatI CATG 1 cut(s) 431
FauNDI CATATG 1 cut(s) 462
FbaI TGATCA 2 cut(s) 477, 861
Fnu4HI GCNGC 4 cut(s) 358, 452, 638, 888
FokI GGATG 2 cut(s) 57, 236
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 4 cut(s) 358, 452, 638, 888
FspBI CTAG 3 cut(s) 18, 533, 749
GluI GCNGC 4 cut(s) 358, 452, 638, 888
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 3 cut(s) 110, 739, 757
HapII CCGG 5 cut(s) 119, 233, 390, 754, 758
Hin1II CATG 1 cut(s) 435
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 3 cut(s) 537, 596, 714
HpaII CCGG 5 cut(s) 119, 233, 390, 754, 758
HphI GGTGA 3 cut(s) 124, 436, 860
Hpy166II GTNNAC 2 cut(s) 132, 664
Hpy188I TCNGA 6 cut(s) 89, 370, 482, 554, 562, 778
Hpy188III TCNNGA 2 cut(s) 255, 718
Hpy8I GTNNAC 2 cut(s) 132, 664
HpyAV CCTTC 5 cut(s) 76, 145, 539, 565, 809
HpyCH4III ACNGT 1 cut(s) 894
HpyCH4IV ACGT 2 cut(s) 243, 414
HpyCH4V TGCA 4 cut(s) 374, 608, 619, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 243, 414
Hsp92II CATG 1 cut(s) 435
KpnI GGTACC 1 cut(s) 764
Ksp22I TGATCA 2 cut(s) 477, 861
Kzo9I GATC 2 cut(s) 477, 861
LmnI GCTCC 7 cut(s) 167, 268, 435, 494, 502, 700, 732
Lsp1109I GCAGC 4 cut(s) 344, 438, 624, 899
LweI GCATC 2 cut(s) 361, 566
MaeI CTAG 3 cut(s) 18, 533, 749
MaeII ACGT 2 cut(s) 243, 414
MaeIII GTNAC 2 cut(s) 239, 424
MalI GATC 2 cut(s) 479, 863
MbiI CCGCTC 1 cut(s) 438
MboI GATC 2 cut(s) 477, 861
MboII GAAGA 5 cut(s) 74, 130, 160, 521, 721
MhlI GDGCHC 3 cut(s) 249, 319, 499
MluCI AATT 2 cut(s) 52, 273
MlyI GAGTC 2 cut(s) 605, 708
MmeI TCCRAC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 4 cut(s) 24, 50, 126, 873
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 5 cut(s) 119, 233, 390, 754, 758
MspR9I CCNGG 4 cut(s) 119, 391, 501, 521
MvaI CCWGG 2 cut(s) 501, 521
MwoI GCNNNNNNNGC 1 cut(s) 444
NciI CCSGG 2 cut(s) 119, 391
NdeI CATATG 1 cut(s) 462
NdeII GATC 2 cut(s) 477, 861
NlaIII CATG 1 cut(s) 435
NlaIV GGNNCC 2 cut(s) 297, 762
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 537
PkrI GCNGC 4 cut(s) 359, 453, 639, 889
PleI GAGTC 2 cut(s) 604, 708
PpsI GAGTC 2 cut(s) 604, 708
Ppu21I YACGTR 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 499, 519
PspGI CCWGG 2 cut(s) 499, 519
PspN4I GGNNCC 2 cut(s) 297, 762
PspPI GGNCC 3 cut(s) 257, 440, 737
PstNI CAGNNNCTG 1 cut(s) 637
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 4 cut(s) 24, 50, 126, 873
SatI GCNGC 4 cut(s) 358, 452, 638, 888
Sau3AI GATC 2 cut(s) 477, 861
Sau96I GGNCC 3 cut(s) 257, 440, 737
SchI GAGTC 2 cut(s) 605, 708
ScrFI CCNGG 4 cut(s) 119, 391, 501, 521
SduI GDGCHC 3 cut(s) 249, 319, 499
SfaNI GCATC 2 cut(s) 361, 566
SinI GGWCC 2 cut(s) 257, 440
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 2 cut(s) 52, 273
SsiI CCGC 3 cut(s) 263, 438, 653
SspMI CTAG 3 cut(s) 18, 533, 749
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 4 cut(s) 117, 389, 499, 519
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 894
TaiI ACGT 2 cut(s) 246, 417
TaqI TCGA 1 cut(s) 569
TasI AATT 2 cut(s) 52, 273
TfiI GAWTC 1 cut(s) 537
Tru1I TTAA 4 cut(s) 24, 50, 126, 873
Tru9I TTAA 4 cut(s) 24, 50, 126, 873
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 4 cut(s) 357, 451, 637, 887
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 4 cut(s) 425, 449, 816, 817
VpaK11BI GGWCC 2 cut(s) 257, 440
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 3 cut(s) 18, 533, 749
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.