Rmu_co8489763.1_g000002

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8489763.1
OG0000592
Physical Location & Seq
Forward (+)
819 .. 1598
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8489763.1_g000002.1.cds

Sequence Viewer

Length: 780 bp
atgttgcataaaatgggacagaagctgccacaagcagctgcagttgccgtcaactcttttgaaacaatggacttgaaagttactgaggaattgaagaaaagactccaaaagttgatccttgttggtccactacatcttgtccgaccactacaatcagtagtatcagatgatgaggatcagcagcaggaggaggatgtatgcttacaatggctggacgaccacgagcctgcgtcggtagcatacatcagtcttggaagtctgggggcactaccccccatggaggtagtagcattagctgaagctttagaggaaggtggattcctctttctttggtcatttaggggaaacctggaagactttccacaagaatttatcgaaagaacaaataagttattgataggaaaaatagtttcatgggtgaatcaagagcaaatcctaaatcatacctcgataggagtgcacgtaacacatagtggttggaactcgattttggagagtgtaagttgttgtgttcctatgattaggaggcctggttttgctgatcaacacataaatatgcggagcgtagaagtggtatggaaaattggtgtgagaattgagggaggcgttttcactaaaactggagcagtcaaggcactggaacaagtcttatcgcttgaacaaggaaaagagatgagacagagaattggggtccttaaacagcttgctcaagaggctgtgggacccaatgggaggtcagctcaaaacttgagagctttggtagagatcatcaaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

259

Amino Acids

28.8

Weight (kDa)

5.7

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 559
AclWI GGATC 2 cut(s) 109, 183
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 280, 732
AgsI TTSAA 4 cut(s) 62, 76, 94, 659
AjnI CCWGG 2 cut(s) 348, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 8 cut(s) 25, 38, 296, 302, 703, 740, 755, 776
AluI AGCT 8 cut(s) 25, 38, 296, 302, 703, 740, 755, 776
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 670
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 2 cut(s) 109, 183
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 1 cut(s) 527
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 25, 35, 38, 181
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 125, 691, 722
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 3 cut(s) 125, 691, 722
BaeGI GKGCMC 2 cut(s) 268, 462
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 12, 25, 47, 193
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 2 cut(s) 350, 531
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 670
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 4 cut(s) 26, 36, 39, 182
BlsI GCNGC 4 cut(s) 27, 37, 40, 183
Bme1390I CCNGG 2 cut(s) 350, 531
Bme18I GGWCC 3 cut(s) 125, 691, 722
BmgT120I GGNCC 3 cut(s) 125, 691, 722
BmiI GGNNCC 3 cut(s) 692, 723, 724
BmrFI CCNGG 2 cut(s) 350, 531
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 1 cut(s) 642
BpuEI CTTGAG 2 cut(s) 693, 769
BsaAI YACGTR 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 517, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 732
Bse1I ACTGG 2 cut(s) 625, 642
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 2 cut(s) 350, 531
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 280, 732
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 625, 642
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 268, 462
BseXI GCAGC 4 cut(s) 12, 25, 47, 193
BshFI GGCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 462
BslFI GGGAC 2 cut(s) 30, 735
BslI CCNNNNNNNGG 2 cut(s) 280, 732
BsmAI GTCTC 1 cut(s) 670
BsmFI GGGAC 2 cut(s) 30, 735
BsnI GGCC 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 268, 462
Bsp143I GATC 4 cut(s) 114, 175, 541, 765
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 559
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 692, 723, 724
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 109, 183
BsrI ACTGG 2 cut(s) 625, 642
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 4 cut(s) 114, 175, 541, 765
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 350, 531
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 228, 705
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 4 cut(s) 117, 178, 544, 768
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 4 cut(s) 114, 175, 541, 765
BstMWI GCNNNNNNNGC 4 cut(s) 44, 236, 632, 713
BstNI CCWGG 2 cut(s) 350, 531
BstSCI CCNGG 2 cut(s) 348, 529
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 268, 462
BstV1I GCAGC 4 cut(s) 12, 25, 47, 193
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 228, 705
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 125, 691, 722
CseI GACGC 1 cut(s) 219
CviAII CATG 2 cut(s) 277, 414
DdeI CTNAG 1 cut(s) 84
DpnI GATC 4 cut(s) 116, 177, 543, 767
DpnII GATC 4 cut(s) 114, 175, 541, 765
DraIII CACNNNGTG 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 529
Eco47I GGWCC 3 cut(s) 125, 691, 722
Eco57I CTGAAG 1 cut(s) 318
EcoO109I RGGNCCY 2 cut(s) 691, 722
EcoRII CCWGG 2 cut(s) 348, 529
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 280, 417
FaqI GGGAC 2 cut(s) 30, 735
FatI CATG 2 cut(s) 276, 413
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 26, 36, 39, 182
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 26, 36, 39, 182
GluI GCNGC 4 cut(s) 26, 36, 39, 182
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 1 cut(s) 529
HgaI GACGC 1 cut(s) 219
Hin1II CATG 2 cut(s) 280, 417
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 2 cut(s) 300, 774
HinfI GANTC 3 cut(s) 102, 318, 421
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 3 cut(s) 52, 128, 460
Hpy188I TCNGA 2 cut(s) 143, 166
Hpy188III TCNNGA 2 cut(s) 425, 710
Hpy8I GTNNAC 3 cut(s) 52, 128, 460
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 7, 41, 460
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 236, 632, 713
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 280, 417
KflI GGGWCCC 1 cut(s) 722
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 4 cut(s) 114, 175, 541, 765
LmnI GCTCC 2 cut(s) 561, 623
Lsp1109I GCAGC 4 cut(s) 12, 25, 47, 193
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 79, 463
MalI GATC 4 cut(s) 116, 177, 543, 767
MboI GATC 4 cut(s) 114, 175, 541, 765
MboII GAAGA 2 cut(s) 106, 365
MhlI GDGCHC 2 cut(s) 268, 462
MluCI AATT 5 cut(s) 89, 368, 582, 594, 684
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 166, 458
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 350, 531
MvaI CCWGG 2 cut(s) 350, 531
MwoI GCNNNNNNNGC 4 cut(s) 44, 236, 632, 713
NcoI CCATGG 1 cut(s) 276
NdeII GATC 4 cut(s) 114, 175, 541, 765
NlaIII CATG 2 cut(s) 280, 417
NlaIV GGNNCC 3 cut(s) 692, 723, 724
PceI AGGCCT 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 318, 421
PkrI GCNGC 4 cut(s) 27, 37, 40, 183
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 463
PpuMI RGGWCCY 2 cut(s) 691, 722
Psp5II RGGWCCY 2 cut(s) 691, 722
Psp6I CCWGG 2 cut(s) 348, 529
PspGI CCWGG 2 cut(s) 348, 529
PspN4I GGNNCC 3 cut(s) 692, 723, 724
PspPI GGNCC 3 cut(s) 125, 691, 722
PspPPI RGGWCCY 2 cut(s) 691, 722
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 4 cut(s) 26, 36, 39, 182
Sau3AI GATC 4 cut(s) 114, 175, 541, 765
Sau96I GGNCC 3 cut(s) 125, 691, 722
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 350, 531
SduI GDGCHC 2 cut(s) 268, 462
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 3 cut(s) 125, 691, 722
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 708, 748
SmoI CTYRAG 2 cut(s) 708, 748
Sse9I AATT 5 cut(s) 89, 368, 582, 594, 684
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 1 cut(s) 559
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 348, 529
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 465
TaqI TCGA 3 cut(s) 375, 449, 485
TasI AATT 5 cut(s) 89, 368, 582, 594, 684
TfiI GAWTC 2 cut(s) 318, 421
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 642
TseI GCWGC 4 cut(s) 25, 35, 38, 181
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 642
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 125, 691, 722
XapI RAATTY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.