MD00G1134400.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000592
Physical Location & Seq
Reverse (-)
29093349 .. 29094095
747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1134400.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGGACAAACACTTCCAAAAGCAACTGCAGTTGCCATAAACTCCTTTGAAGAACTGGAACCTGAAGTTGTGAATTTACTCAAATCAAGATTCCAGAAGTTCCTCAACGTTGGACCCTTTAGTTTAATAACATCGTCCCCGACGCCGCCGTTGATCAAAGATGACAGTGGCTGCTTAGAGTGGCTGGACAAGCACAAGCCTACATCTGTTGCATATATTAGCTTTGGAAGTGTGGTTGCACCACCACCTCATGAGCTGGCAGCATTTGCTCAGGTGTTAATTGAAACTGGGTTTCCATTTATTTGGTCATTTAGGGGCAACATAGAGGATGTATTGCCCAAGGGGTTTAACAAAAGTGGCTTGAATGGAAAAATAGTTCCCTGGGCACCACAAGTGCAAGTCTTGGGGCATGCCTCAACTGGAGTTTTCTTAACGCATTGCGGGTGGAATTCAATCTTGGAGAGCATTGTTGGCGGTGTGCCGATGATTTGCAGGCCATTTTTTGGGGATCAAAAGCTTAACATGAACACTATAGAGGCTGTGTGGGAAATTGGTGTGGGGATTGAAGGAGGGGTCATTACAAAAAATGGAGTGATAAAGGCCTTGGAGCTGACTTTGAAGCATAAAGAAGGGAATGAAATGAGAGAGAAAATCAAGGTCCTAAAAAATCTTGCTCAACAAGCTGTTGCAAGTAATGGTAGCTCTCCACAAGCATTCAGTACCTTGGTGGAGATTGTCACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

249

Amino Acids

26.88

Weight (kDa)

6.97

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 69 - 210 1.9e-34 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 503
AciI CCGC 3 cut(s) 146, 441, 474
AclI AACGTT 1 cut(s) 108
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 2 cut(s) 73, 448
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 6 cut(s) 50, 284, 364, 453, 566, 619
AjnI CCWGG 1 cut(s) 380
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 6 cut(s) 222, 256, 517, 610, 683, 702
AluI AGCT 6 cut(s) 222, 256, 517, 610, 683, 702
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 2 cut(s) 494, 600
ApeKI GCWGC 2 cut(s) 171, 260
ApoI RAATTY 2 cut(s) 73, 448
AspS9I GGNCC 2 cut(s) 113, 658
AvaII GGWCC 2 cut(s) 113, 658
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 158, 272
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 382
BclI TGATCA 1 cut(s) 153
BfmI CTRYAG 2 cut(s) 27, 531
BisI GCNGC 3 cut(s) 146, 172, 261
BlsI GCNGC 3 cut(s) 147, 173, 262
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 2 cut(s) 113, 658
BmgT120I GGNCC 2 cut(s) 113, 658
BmiI GGNNCC 3 cut(s) 60, 115, 387
BmrFI CCNGG 1 cut(s) 382
BmrI ACTGGG 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 5 cut(s) 339, 380, 381, 603, 723
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 60, 292, 424
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 5 cut(s) 339, 380, 381, 603, 723
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 3 cut(s) 60, 292, 424
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 158, 272
BshFI GGCC 2 cut(s) 496, 602
BshNI GGYRCC 1 cut(s) 385
BslFI GGGAC 2 cut(s) 18, 121
BslI CCNNNNNNNGG 1 cut(s) 503
BsmFI GGGAC 2 cut(s) 18, 121
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 2 cut(s) 496, 602
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 153, 508
BspACI CCGC 3 cut(s) 146, 441, 474
BspANI GGCC 2 cut(s) 496, 602
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 60, 115, 387
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 3 cut(s) 60, 292, 424
BssECI CCNNGG 5 cut(s) 339, 380, 381, 603, 723
BssMI GATC 2 cut(s) 153, 508
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 3 cut(s) 339, 603, 723
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 258, 411, 494
BstDEI CTNAG 2 cut(s) 175, 270
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 156, 511
BstMBI GATC 2 cut(s) 153, 508
BstMWI GCNNNNNNNGC 4 cut(s) 190, 266, 471, 680
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 380
BstSFI CTRYAG 2 cut(s) 27, 531
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 158, 272
BstXI CCANNNNNNTGG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 496, 602
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 258, 411, 494
CaiI CAGNNNCTG 1 cut(s) 171
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 113, 658
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 720
CviAII CATG 3 cut(s) 251, 410, 523
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 2 cut(s) 175, 270
DpnI GATC 2 cut(s) 155, 510
DpnII GATC 2 cut(s) 153, 508
Eco130I CCWWGG 3 cut(s) 339, 603, 723
Eco147I AGGCCT 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 113, 658
Eco57I CTGAAG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 658
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 3 cut(s) 339, 603, 723
ErhI CCWWGG 3 cut(s) 339, 603, 723
FaeI CATG 3 cut(s) 254, 413, 526
FaiI YATR 9 cut(s) 38, 214, 216, 252, 323, 411, 524, 533, 624
FaqI GGGAC 2 cut(s) 18, 121
FatI CATG 3 cut(s) 250, 409, 522
FauI CCCGC 1 cut(s) 434
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 146, 172, 261
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 3 cut(s) 146, 172, 261
GluI GCNGC 3 cut(s) 146, 172, 261
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 496, 602
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 254, 413, 526
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 87, 94, 251
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 560, 623
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 6 cut(s) 29, 212, 239, 397, 492, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 266, 471, 680
HpyF3I CTNAG 2 cut(s) 175, 270
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 254, 413, 526
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 153, 508
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 2 cut(s) 158, 272
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 736
MalI GATC 2 cut(s) 155, 510
MboI GATC 2 cut(s) 153, 508
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 4 cut(s) 73, 279, 448, 549
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 6 cut(s) 113, 258, 319, 424, 529, 563
MseI TTAA 5 cut(s) 125, 278, 348, 431, 519
MspR9I CCNGG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 4 cut(s) 190, 266, 471, 680
NdeII GATC 2 cut(s) 153, 508
NlaIII CATG 3 cut(s) 254, 413, 526
NlaIV GGNNCC 3 cut(s) 60, 115, 387
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 1 cut(s) 413
PaeI GCATGC 1 cut(s) 413
PagI TCATGA 1 cut(s) 250
PasI CCCWGGG 1 cut(s) 381
PceI AGGCCT 1 cut(s) 602
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 3 cut(s) 147, 173, 262
PpuMI RGGWCCY 1 cut(s) 658
Psp1406I AACGTT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 3 cut(s) 60, 115, 387
PspPI GGNCC 2 cut(s) 113, 658
PspPPI RGGWCCY 1 cut(s) 658
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 171
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SaqAI TTAA 5 cut(s) 125, 278, 348, 431, 519
SatI GCNGC 3 cut(s) 146, 172, 261
Sau3AI GATC 2 cut(s) 153, 508
Sau96I GGNCC 2 cut(s) 113, 658
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 27, 531
SinI GGWCC 2 cut(s) 113, 658
SphI GCATGC 1 cut(s) 413
Sse9I AATT 4 cut(s) 73, 279, 448, 549
SseBI AGGCCT 1 cut(s) 602
SsiI CCGC 3 cut(s) 146, 441, 474
StuI AGGCCT 1 cut(s) 602
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 3 cut(s) 339, 603, 723
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 73, 279, 448, 549
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 5 cut(s) 125, 278, 348, 431, 519
Tru9I TTAA 5 cut(s) 125, 278, 348, 431, 519
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 171, 260
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 2 cut(s) 539, 651
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 113, 658
XapI RAATTY 2 cut(s) 73, 448
XceI RCATGY 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.