Rh4DG043500

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
7100128 .. 7102418
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043500.1

Sequence Viewer

Length: 1383 bp
ATGAGCCACAAAGTTGCTAGTTCTAGTCCTCAAAATGTTGCAGTCTTAGTTTTTCCATTCGCCTCCCATCCCGGCTCTCTTCTCCGATTTGTACGTTCGATTTCAACTGTGGCCCCAGACATGCAGTTCACCTTCTTCAACACATCTAGATCAAATAGTTCCCTCTTCTCGAGTTCCGGCAAAAAGGGTTGTGATAATGTAAAGCCATACAACGTATGGGATGGCTTGCCAGATGACTACATACCCCTCTCCAGAAATCCGCTGGAGCAAATTGAGTTGTTCCTTGACAATGCACTTGGTAACTTCGAGAAGGCAATCAAAGAGGTGGAGGCTGAAACAGGACACAAGTTCGGCTGCTTGATTTCAGATGCATTCCTCTGGTTTGCTGGTGACATAGCCGAAAAGATGCACGTCTCTTGGGTGCCCTTATGGTTCAGTGGACAACGTTCACTGCTTGTTCATATTGAGACTGATATAATTAGAGAAAAAGTGGGAGCTCTTGGACAAGAAGACAAAACTGTGGACTTCCTTCCGGGATTCTCAGATCAATTTCGAGCATGTGACTTACCCAAGGAAGCTGTATTTGGAGACATAGAATCCCCATTTACAAAAATGCTGCATAAAATGGGACAGAAGCTTCCACAAGCAACTGTGGTTGTCATCAACTCTATTGAAAATATGGACTTCACAGTTACTGAGGAGCTGAAGAAAAGACTCCAGAAGTTGCTCCTTGTTGGGCCACTACATCTTGTTCGGCCAGTACCATCAGTTATATCAGATGAGGAGGAAGAGAAAGATGTCTGCTTACAGTGGTTGGACAACCACCGGCCTGCGTCAGTAGCATACATTAGCTTTGGAAGTCTGGGGGCACTGCCGCCCATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAAGGTGGATTCCCCTTTCTTTGGTCATTTAGGGGAAATCAAGAGGACTTTCCACAAGGATTTATCGAAAGAACAAACAGGTTATCCATAGGAAAAGTAGTTCCATGGGTGAACCAAGAACAAATCCTAAATCATACCTCGATAGGAGTGCATGTAACACATTGCGGTTGGAATTCAATTTTAGAGAGTGTAACTTGTAGTGTTCCTCTGATTGGGAGGCCTGTTTTTGCTGACCAACACATAAATATGCGGAGCGTAGAAGTTGTATGGAAGATCGGTGTGAGAATTGAGGGAGGCGTTTTCACTAAAAGTGGAGCAGTCAAGGCATTGGAACAAGTTTTATCGCTTGAACAAGGAAAAGAAATGAGACATAGAGTTGGAGTCCTTAAGCAGCTTGCTCAAGAGGCTGTTGGACCAAATGGGCGTTCAGCTCAAGACTTGAAAGCCTTGGTAGAGATCATCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

51.07

Weight (kDa)

5.76

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 113 - 425 4e-27 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 4 cut(s) 260, 875, 1077, 1162
AclI AACGTT 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 1 cut(s) 1084
AcuI CTGAAG 1 cut(s) 725
AfaI GTAC 2 cut(s) 93, 762
AfiI CCNNNNNNNGG 2 cut(s) 933, 1124
AflII CTTAAG 1 cut(s) 1298
AgsI TTSAA 6 cut(s) 105, 139, 674, 1089, 1262, 1354
AjiI CACGTC 1 cut(s) 412
AjuI GAANNNNNNNTTGG 4 cut(s) 567, 599, 1321, 1353
AloI GAACNNNNNNTCC 2 cut(s) 996, 1028
AluBI AGCT 8 cut(s) 497, 578, 637, 703, 852, 899, 1306, 1343
AluI AGCT 8 cut(s) 497, 578, 637, 703, 852, 899, 1306, 1343
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 4 cut(s) 418, 461, 582, 1273
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 5 cut(s) 111, 737, 755, 827, 1130
ApeKI GCWGC 4 cut(s) 354, 616, 890, 1303
ApoI RAATTY 1 cut(s) 1084
AspS9I GGNCC 3 cut(s) 112, 737, 1325
AsuC2I CCSGG 2 cut(s) 72, 534
AsuHPI GGTGA 3 cut(s) 121, 401, 1033
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 1325
BaeGI GKGCMC 2 cut(s) 426, 871
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 499
BbvCI CCTCAGC 1 cut(s) 900
BbvI GCAGC 4 cut(s) 341, 603, 902, 1315
BccI CCATC 3 cut(s) 75, 215, 772
BcgI CGANNNNNNTGC 2 cut(s) 1042, 1076
BcnI CCSGG 2 cut(s) 72, 534
BcoDI GTCTC 4 cut(s) 418, 461, 582, 1273
BfaI CTAG 3 cut(s) 18, 24, 147
BfrI CTTAAG 1 cut(s) 1298
BisI GCNGC 5 cut(s) 355, 617, 875, 891, 1304
BlsI GCNGC 5 cut(s) 356, 618, 876, 892, 1305
Bme1390I CCNGG 2 cut(s) 72, 534
Bme18I GGWCC 1 cut(s) 1325
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 112, 737, 1325
BmiI GGNNCC 2 cut(s) 114, 423
BmrFI CCNGG 2 cut(s) 72, 534
BmsI GCATC 2 cut(s) 358, 396
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 3 cut(s) 235, 284, 701
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 1296, 1329
BpuMI CCSGG 2 cut(s) 72, 534
BsaJI CCNNGG 4 cut(s) 570, 879, 1016, 1359
BsaXI ACNNNNNCTCC 2 cut(s) 1050, 1080
Bsc4I CCNNNNNNNGG 2 cut(s) 933, 1124
Bse118I RCCGGY 1 cut(s) 825
Bse1I ACTGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 1072
BseDI CCNNGG 4 cut(s) 570, 879, 1016, 1359
BseGI GGATG 2 cut(s) 67, 226
BseLI CCNNNNNNNGG 2 cut(s) 933, 1124
BseMI GCAATG 1 cut(s) 1072
BseMII CTCAG 3 cut(s) 555, 687, 891
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 2 cut(s) 713, 797
BseSI GKGCMC 2 cut(s) 426, 871
BseXI GCAGC 4 cut(s) 341, 603, 902, 1315
BshFI GGCC 5 cut(s) 113, 739, 757, 829, 1132
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 4 cut(s) 72, 177, 533, 826
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 2 cut(s) 933, 1124
BsmAI GTCTC 4 cut(s) 418, 461, 582, 1273
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 5 cut(s) 113, 739, 757, 829, 1132
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 3 cut(s) 426, 499, 871
Bsp143I GATC 4 cut(s) 149, 544, 1185, 1368
Bsp19I CCATGG 2 cut(s) 879, 1016
BspACI CCGC 4 cut(s) 260, 875, 1077, 1162
BspANI GGCC 5 cut(s) 113, 739, 757, 829, 1132
BspCNI CTCAG 3 cut(s) 554, 688, 892
BspLI GGNNCC 2 cut(s) 114, 423
BspT107I GGYRCC 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 1072
BsrFI RCCGGY 1 cut(s) 825
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 1 cut(s) 825
BssECI CCNNGG 4 cut(s) 570, 879, 1016, 1359
BssMI GATC 4 cut(s) 149, 544, 1185, 1368
BssT1I CCWWGG 4 cut(s) 570, 879, 1016, 1359
Bst4CI ACNGT 5 cut(s) 109, 520, 652, 691, 810
Bst6I CTCTTC 3 cut(s) 84, 170, 783
BstAFI CTTAAG 1 cut(s) 1298
BstC8I GCNNGC 3 cut(s) 227, 831, 1308
BstDEI CTNAG 4 cut(s) 46, 541, 696, 900
BstDSI CCRYGG 2 cut(s) 879, 1016
BstF5I GGATG 2 cut(s) 67, 226
BstKTI GATC 4 cut(s) 152, 547, 1188, 1371
BstMAI GTCTC 4 cut(s) 418, 461, 582, 1273
BstMBI GATC 4 cut(s) 149, 544, 1185, 1368
BstMWI GCNNNNNNNGC 4 cut(s) 839, 896, 1235, 1316
BstNSI RCATGY 3 cut(s) 124, 561, 1067
BstSCI CCNGG 2 cut(s) 70, 532
BstSLI GKGCMC 2 cut(s) 426, 871
BstV1I GCAGC 4 cut(s) 341, 603, 902, 1315
BstV2I GAAGAC 1 cut(s) 516
BsuRI GGCC 5 cut(s) 113, 739, 757, 829, 1132
BtgI CCRYGG 2 cut(s) 879, 1016
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 226
BtsI GCAGTG 2 cut(s) 449, 869
BtsIMutI CAGTG 4 cut(s) 442, 449, 815, 869
Cac8I GCNNGC 3 cut(s) 227, 831, 1308
CaiI CAGNNNCTG 1 cut(s) 695
Cfr10I RCCGGY 1 cut(s) 825
Cfr13I GGNCC 3 cut(s) 112, 737, 1325
CseI GACGC 1 cut(s) 822
Csp6I GTAC 2 cut(s) 92, 761
CviAII CATG 5 cut(s) 121, 558, 880, 1017, 1064
CviQI GTAC 2 cut(s) 92, 761
DdeI CTNAG 4 cut(s) 46, 541, 696, 900
DpnI GATC 4 cut(s) 151, 546, 1187, 1370
DpnII GATC 4 cut(s) 149, 544, 1185, 1368
EaeI YGGCCR 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 84, 170, 783
EarI CTCTTC 3 cut(s) 84, 170, 783
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 4 cut(s) 570, 879, 1016, 1359
Eco147I AGGCCT 1 cut(s) 1132
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 1325
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1084
EcoT14I CCWWGG 4 cut(s) 570, 879, 1016, 1359
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 4 cut(s) 570, 879, 1016, 1359
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 5 cut(s) 124, 561, 883, 1020, 1067
FaqI GGGAC 1 cut(s) 642
FatI CATG 5 cut(s) 120, 557, 879, 1016, 1063
Fnu4HI GCNGC 5 cut(s) 355, 617, 875, 891, 1304
FokI GGATG 2 cut(s) 54, 233
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 5 cut(s) 355, 617, 875, 891, 1304
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 5 cut(s) 355, 617, 875, 891, 1304
GsuI CTGGAG 3 cut(s) 235, 284, 701
HaeIII GGCC 5 cut(s) 113, 739, 757, 829, 1132
HapII CCGG 4 cut(s) 72, 177, 533, 826
HgaI GACGC 1 cut(s) 822
Hin1II CATG 5 cut(s) 124, 561, 883, 1020, 1067
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 537, 596, 714, 921, 1293
HpaII CCGG 4 cut(s) 72, 177, 533, 826
HphI GGTGA 3 cut(s) 121, 401, 1033
Hpy166II GTNNAC 5 cut(s) 129, 440, 449, 523, 1024
Hpy188I TCNGA 5 cut(s) 86, 367, 544, 778, 1122
Hpy188III TCNNGA 8 cut(s) 147, 169, 252, 307, 718, 953, 1313, 1346
Hpy8I GTNNAC 5 cut(s) 129, 440, 449, 523, 1024
HpyAV CCTTC 4 cut(s) 142, 304, 539, 908
HpyCH4III ACNGT 5 cut(s) 109, 520, 652, 691, 810
HpyCH4IV ACGT 4 cut(s) 94, 213, 411, 445
HpyCH4V TGCA 7 cut(s) 41, 124, 293, 371, 409, 619, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 839, 896, 1235, 1316
HpyF3I CTNAG 4 cut(s) 46, 541, 696, 900
HpySE526I ACGT 4 cut(s) 94, 213, 411, 445
Hsp92II CATG 5 cut(s) 124, 561, 883, 1020, 1067
Kzo9I GATC 4 cut(s) 149, 544, 1185, 1368
LmnI GCTCC 6 cut(s) 265, 494, 700, 732, 1164, 1226
Lsp1109I GCAGC 4 cut(s) 341, 603, 902, 1315
LweI GCATC 2 cut(s) 358, 396
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 411, 445
MaeIII GTNAC 6 cut(s) 299, 389, 560, 691, 1066, 1102
MalI GATC 4 cut(s) 151, 546, 1187, 1370
MboI GATC 4 cut(s) 149, 544, 1185, 1368
MboII GAAGA 7 cut(s) 71, 127, 157, 521, 718, 800, 1195
MhlI GDGCHC 3 cut(s) 426, 499, 871
MluCI AATT 6 cut(s) 270, 477, 548, 1084, 1089, 1197
MlyI GAGTC 2 cut(s) 708, 1302
MmeI TCCRAC 4 cut(s) 795, 1061, 1270, 1303
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 1299
MslI CAYNNNNRTG 1 cut(s) 1157
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 1298
MspI CCGG 4 cut(s) 72, 177, 533, 826
MspR9I CCNGG 2 cut(s) 72, 534
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 839, 896, 1235, 1316
NciI CCSGG 2 cut(s) 72, 534
NcoI CCATGG 2 cut(s) 879, 1016
NdeII GATC 4 cut(s) 149, 544, 1185, 1368
NlaIII CATG 5 cut(s) 124, 561, 883, 1020, 1067
NlaIV GGNNCC 2 cut(s) 114, 423
NmuCI GTSAC 2 cut(s) 389, 560
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 3 cut(s) 124, 561, 1067
PaeR7I CTCGAG 1 cut(s) 169
PceI AGGCCT 1 cut(s) 1132
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 537, 596, 921
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 5 cut(s) 356, 618, 876, 892, 1305
PleI GAGTC 2 cut(s) 708, 1301
PpsI GAGTC 2 cut(s) 708, 1301
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 114, 423
PspPI GGNCC 3 cut(s) 112, 737, 1325
PstNI CAGNNNCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 93, 762
RsaNI GTAC 2 cut(s) 92, 761
RseI CAYNNNNRTG 1 cut(s) 1157
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 1299
SatI GCNGC 5 cut(s) 355, 617, 875, 891, 1304
Sau3AI GATC 4 cut(s) 149, 544, 1185, 1368
Sau96I GGNCC 3 cut(s) 112, 737, 1325
SchI GAGTC 2 cut(s) 708, 1302
ScrFI CCNGG 2 cut(s) 72, 534
SduI GDGCHC 3 cut(s) 426, 499, 871
SfaNI GCATC 2 cut(s) 358, 396
Sfr274I CTCGAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 1325
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 1157
SmlI CTYRAG 4 cut(s) 169, 1298, 1311, 1344
SmoI CTYRAG 4 cut(s) 169, 1298, 1311, 1344
Sse9I AATT 6 cut(s) 270, 477, 548, 1084, 1089, 1197
SseBI AGGCCT 1 cut(s) 1132
SsiI CCGC 4 cut(s) 260, 875, 1077, 1162
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 1132
StyD4I CCNGG 2 cut(s) 70, 532
StyI CCWWGG 4 cut(s) 570, 879, 1016, 1359
TaaI ACNGT 5 cut(s) 109, 520, 652, 691, 810
TaiI ACGT 4 cut(s) 97, 216, 414, 448
TaqI TCGA 6 cut(s) 98, 170, 306, 553, 978, 1052
TasI AATT 6 cut(s) 270, 477, 548, 1084, 1089, 1197
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 3 cut(s) 537, 596, 921
Tru1I TTAA 1 cut(s) 1299
Tru9I TTAA 1 cut(s) 1299
TscAI CASTG 4 cut(s) 442, 456, 815, 876
TseFI GTSAC 2 cut(s) 389, 560
TseI GCWGC 4 cut(s) 354, 616, 890, 1303
Tsp45I GTSAC 2 cut(s) 389, 560
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 4 cut(s) 442, 456, 815, 876
Vha464I CTTAAG 1 cut(s) 1298
VpaK11BI GGWCC 1 cut(s) 1325
XapI RAATTY 1 cut(s) 1084
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 3 cut(s) 124, 561, 1067
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 259
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 3 cut(s) 18, 24, 147
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.