Rorug04G0002500

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000592
Physical Location & Seq
Forward (+)
499617 .. 506475
6859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0002500.1

Sequence Viewer

Length: 723 bp
ATGTCTAAAGCTCGCGTCGCCGTCGACATCAACGTCCTCCGCCGCAAGGATTTTCGGGACTACGAGTCCTTCATCGTCCAATGGGGGGGATTAGACGAGAAAGGAAAAAAGAAGAAGAAGAAGGAACAAGGACAACGAACGGAGGAGGAGAAAGGGAGAGAAGAAAAGAAAAGAAAAGAAGAAGATGGGAAGGGAGAAAGAGATAGAGATTTTGGGCTCGATGATGAGTTGGATTTTGGTCTAGGAGTTTCGGGTACTGCAACTAGGAAGATGTTCTTAGGTCCAAGATGCGAGGGAGTTGACTTGTTTGCTAATAGAGCTCGTTTGAGAGCTGTAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTGTTTTGGGTTCGAGTTTTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGTTATGGGGTTGTTGACAAGTGCATATTGATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGATGGTTGAACCAATGTTGAAGGCTGCTATGTATCCTTTTCTATTGGTTACACATAGTAAATATGGTTTGAAAGGCAACAATCTCTACTATGTAGGTTTATGTGTTACATTTTATCCATGGAGGAGTAGGGGAGAACGCACATATCATGCCGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

240

Amino Acids

27.05

Weight (kDa)

9.41

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 40, 43
AcoI YGGCCR 1 cut(s) 548
AfaI GTAC 2 cut(s) 256, 364
AfiI CCNNNNNNNGG 2 cut(s) 46, 85
AgsI TTSAA 3 cut(s) 572, 583, 634
AhdI GACNNNNNGTC 1 cut(s) 64
AluBI AGCT 5 cut(s) 11, 320, 332, 434, 473
AluI AGCT 5 cut(s) 11, 320, 332, 434, 473
Alw21I GWGCWC 1 cut(s) 322
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 3 cut(s) 431, 559, 587
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 219, 322
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 443, 546, 574
BccI CCATC 2 cut(s) 179, 559
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciVI GTATCC 1 cut(s) 606
BfaI CTAG 4 cut(s) 242, 264, 357, 465
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 4 cut(s) 43, 432, 560, 588
BlsI GCNGC 4 cut(s) 44, 433, 561, 589
Bme18I GGWCC 1 cut(s) 281
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 281
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 680
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 85
BseDI CCNNGG 1 cut(s) 680
BseLI CCNNNNNNNGG 2 cut(s) 46, 85
BseRI GAGGAG 3 cut(s) 158, 161, 700
BseXI GCAGC 3 cut(s) 443, 546, 574
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 322
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 46, 85
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 550
Bsp1286I GDGCHC 2 cut(s) 219, 322
Bsp19I CCATGG 1 cut(s) 680
BspACI CCGC 2 cut(s) 40, 43
BspANI GGCC 1 cut(s) 550
BspFNI CGCG 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 680
BstFNI CGCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 17, 317, 556
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 443, 546, 574
BstV2I GAAGAC 1 cut(s) 560
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 680
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 2 cut(s) 4, 565
Csp6I GTAC 2 cut(s) 255, 363
CviAII CATG 2 cut(s) 681, 710
CviJI RGCY 8 cut(s) 11, 217, 320, 332, 434, 473, 550, 587
CviKI_1 RGCY 8 cut(s) 11, 217, 320, 332, 434, 473, 550, 587
CviQI GTAC 2 cut(s) 255, 363
DdeI CTNAG 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 32
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 548
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 2 cut(s) 219, 322
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 2 cut(s) 219, 322
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 2 cut(s) 684, 713
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 680, 709
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 43, 432, 560, 588
FriOI GRGCYC 2 cut(s) 219, 322
Fsp4HI GCNGC 4 cut(s) 43, 432, 560, 588
FspBI CTAG 4 cut(s) 242, 264, 357, 465
GluI GCNGC 4 cut(s) 43, 432, 560, 588
HaeIII GGCC 1 cut(s) 550
HgaI GACGC 2 cut(s) 4, 565
Hin1II CATG 2 cut(s) 684, 713
HincII GTYRAC 3 cut(s) 25, 301, 517
HindII GTYRAC 3 cut(s) 25, 301, 517
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 25, 301, 517
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 3 cut(s) 25, 301, 517
Hpy99I CGWCG 2 cut(s) 20, 26
HpyAV CCTTC 4 cut(s) 79, 115, 184, 577
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 260, 500, 525
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 317, 556
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 684, 713
Lsp1109I GCAGC 3 cut(s) 443, 546, 574
LweI GCATC 1 cut(s) 278
MaeI CTAG 4 cut(s) 242, 264, 357, 465
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 610, 667
MboII GAAGA 8 cut(s) 124, 127, 130, 173, 191, 194, 280, 565
MhlI GDGCHC 2 cut(s) 219, 322
MluCI AATT 1 cut(s) 718
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 6 cut(s) 47, 136, 139, 286, 478, 678
MroXI GAANNNNTTC 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 530
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 17, 317, 556
NcoI CCATGG 1 cut(s) 680
NlaIII CATG 2 cut(s) 684, 713
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 272
PkrI GCNGC 4 cut(s) 44, 433, 561, 589
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 281
RsaI GTAC 2 cut(s) 256, 364
RsaNI GTAC 2 cut(s) 255, 363
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 322
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 4 cut(s) 43, 432, 560, 588
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 219, 322
SetI ASST 9 cut(s) 13, 36, 283, 322, 334, 340, 436, 475, 661
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 1 cut(s) 718
SsiI CCGC 2 cut(s) 40, 43
SspMI CTAG 4 cut(s) 242, 264, 357, 465
SstI GAGCTC 1 cut(s) 322
StyI CCWWGG 1 cut(s) 680
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 24, 219, 383
TasI AATT 1 cut(s) 718
TauI GCSGC 1 cut(s) 45
TseI GCWGC 3 cut(s) 431, 559, 587
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 4 cut(s) 242, 264, 357, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.