Rh4DG043400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
7052781 .. 7076081
23301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043400.1

Sequence Viewer

Length: 981 bp
ATGCGGAGGCGGGCGGCGGCGGGCGACGATGAAGGTGAGGGGAGGAAGAATCGTGGGCGGATCCAACGGCTCCCATTCACTCTGATGAATCAGACGATAGAAGAAGAAATTGATGAGGATATTCGTCGCTCCGGAACTTCTGGAATGGCCCAAGAAGGACAAGCGCCGCGACAGAGGGATATACCAGAAGAGAAGTACTCGGATGCTTTCCTCGTATTCGAGCCGGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTTAATTCCTATGATATTGGGATTGGGTTTGGTTACAAAAGAGCTTGGAGGAAAGATAACAAGAGAGTAGGGGACATTGCCCAGAAAATGAACGTCCCTTGGGTGACTACATGGAGTGGACCACGCCCGCTGCTTGTTCATATGGAGACTGATATGATCAAAGAAAAAGTGGGAGCTCCTGGGCAAGAAGACAAGACCCTGGACTTCCTTCCAGGATTCTCAAATGAGTTCCGAGCATCTGACTTACCGAAGGAAGTTGTATTTGGAAACATAGAGTCGCCACATGCAAATATGTTGTATAAAATGGGACAGAAGCTCCCACAAGCAACTGCGGTTGCCGTCAACTCTTTTGAAACAATGGACTTGAAAGTTGCCGAGGAGCTAAAGAAGAGACTCAAGAAGTTGTTCCTTGTTGGGCCACTACATCTAGTCCGGCCGGTACCATCAGCACAATCAGATGATGACGAGGAGGAGAAGGATGTATGCTTACCGTGGCTGGACAACCACAAGCCTGCATCAGTAGCATACATCAGCTTTGGAAGTGTCGGAGCACTGCCCGCAATGGAGGTATTGGAACAAGCTCTATCGCTTGAGCGAGGAAAAGAAATGAGACACAGAGTTGGAGTCCTTAAACAGCTTGCTCAAGAGGCTGTTGGACCCAATGGGAGTTCAGCTCAGGACTTGAAAGCTCTGGTGGAGATCATCAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

326

Amino Acids

36.62

Weight (kDa)

5.5

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 706
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 131
AclWI GGATC 2 cut(s) 55, 68
AcoI YGGCCR 1 cut(s) 701
AfaI GTAC 2 cut(s) 197, 708
AgsI TTSAA 3 cut(s) 620, 634, 952
AjnI CCWGG 3 cut(s) 445, 465, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
Alw21I GWGCWC 3 cut(s) 252, 445, 820
Alw26I GTCTC 3 cut(s) 407, 652, 871
AlwI GGATC 2 cut(s) 55, 68
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 3 cut(s) 147, 683, 701
ApeKI GCWGC 1 cut(s) 397
Asp700I GAANNNNTTC 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 706
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 148, 386, 683, 923
AsuHPI GGTGA 2 cut(s) 47, 382
AvaII GGWCC 2 cut(s) 386, 923
BamHI GGATCC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 2 cut(s) 252, 445
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 3 cut(s) 252, 445, 820
BbvI GCAGC 1 cut(s) 384
BccI CCATC 1 cut(s) 718
BceAI ACGGC 2 cut(s) 83, 590
BciT130I CCWGG 3 cut(s) 447, 467, 480
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 407, 652, 871
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 4 cut(s) 15, 18, 167, 398
BlsI GCNGC 4 cut(s) 16, 19, 168, 399
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 3 cut(s) 447, 467, 480
Bme18I GGWCC 2 cut(s) 386, 923
BmgT120I GGNCC 4 cut(s) 148, 386, 683, 923
BmiI GGNNCC 4 cut(s) 62, 71, 708, 925
BmrFI CCNGG 3 cut(s) 447, 467, 480
BmsI GCATC 3 cut(s) 193, 512, 791
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 4 cut(s) 182, 214, 925, 957
Bpu10I CCTNAGC 1 cut(s) 942
BpuEI CTTGAG 3 cut(s) 647, 878, 894
BsaJI CCNNGG 5 cut(s) 365, 446, 465, 642, 758
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bse118I RCCGGY 1 cut(s) 703
Bse3DI GCAATG 2 cut(s) 342, 834
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 3 cut(s) 447, 467, 480
BseDI CCNNGG 5 cut(s) 365, 446, 465, 642, 758
BseGI GGATG 2 cut(s) 208, 751
BseMI GCAATG 2 cut(s) 342, 834
BseMII CTCAG 1 cut(s) 956
BseRI GAGGAG 3 cut(s) 659, 749, 752
BseX3I CGGCCG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 149, 685, 703
BshNI GGYRCC 1 cut(s) 706
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 3 cut(s) 252, 445, 820
BsiSI CCGG 4 cut(s) 132, 224, 700, 704
BslFI GGGAC 3 cut(s) 347, 353, 588
BsmAI GTCTC 3 cut(s) 407, 652, 871
BsmFI GGGAC 3 cut(s) 347, 353, 588
BsnI GGCC 3 cut(s) 149, 685, 703
Bsp1286I GDGCHC 3 cut(s) 252, 445, 820
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 4 cut(s) 60, 423, 966, 974
BspANI GGCC 3 cut(s) 149, 685, 703
BspCNI CTCAG 1 cut(s) 955
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 977
BspLI GGNNCC 4 cut(s) 62, 71, 708, 925
BspPI GGATC 2 cut(s) 55, 68
BspT107I GGYRCC 1 cut(s) 706
BsrDI GCAATG 2 cut(s) 342, 834
BsrFI RCCGGY 1 cut(s) 703
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 5 cut(s) 365, 446, 465, 642, 758
BssMI GATC 4 cut(s) 60, 423, 966, 974
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 447, 467, 480
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 2 cut(s) 183, 650
BstC8I GCNNGC 6 cut(s) 12, 22, 395, 780, 825, 906
BstDEI CTNAG 1 cut(s) 942
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 2 cut(s) 208, 751
BstFNI CGCG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 63, 426, 969, 977
BstMAI GTCTC 3 cut(s) 407, 652, 871
BstMBI GATC 4 cut(s) 60, 423, 966, 974
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 3 cut(s) 788, 824, 914
BstNI CCWGG 3 cut(s) 447, 467, 480
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 445, 465, 478
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 701
BsuRI GGCC 3 cut(s) 149, 685, 703
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 2 cut(s) 208, 751
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 6 cut(s) 12, 22, 395, 780, 825, 906
CciI TCATGA 1 cut(s) 977
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 703
Cfr13I GGNCC 4 cut(s) 148, 386, 683, 923
Csp6I GTAC 2 cut(s) 196, 707
CviAII CATG 3 cut(s) 378, 551, 978
CviQI GTAC 2 cut(s) 196, 707
DdeI CTNAG 1 cut(s) 942
DpnI GATC 4 cut(s) 62, 425, 968, 976
DpnII GATC 4 cut(s) 60, 423, 966, 974
EaeI YGGCCR 1 cut(s) 701
EagI CGGCCG 1 cut(s) 701
Eam1104I CTCTTC 2 cut(s) 183, 650
EarI CTCTTC 2 cut(s) 183, 650
EciI GGCGGA 1 cut(s) 73
Ecl136II GAGCTC 2 cut(s) 250, 443
EclXI CGGCCG 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 252, 445
Eco47I GGWCC 2 cut(s) 386, 923
Eco52I CGGCCG 1 cut(s) 701
Eco53kI GAGCTC 2 cut(s) 250, 443
EcoICRI GAGCTC 2 cut(s) 250, 443
EcoRII CCWGG 3 cut(s) 445, 465, 478
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 252, 445
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 3 cut(s) 381, 554, 981
FaqI GGGAC 3 cut(s) 347, 353, 588
FatI CATG 3 cut(s) 377, 550, 977
FauI CCCGC 4 cut(s) 3, 13, 402, 832
FauNDI CATATG 1 cut(s) 408
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 15, 18, 167, 398
FokI GGATG 2 cut(s) 215, 758
FriOI GRGCYC 2 cut(s) 252, 445
Fsp4HI GCNGC 4 cut(s) 15, 18, 167, 398
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 165
GluI GCNGC 4 cut(s) 15, 18, 167, 398
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 149, 685, 703
HapII CCGG 4 cut(s) 132, 224, 700, 704
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 381, 554, 981
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 6 cut(s) 49, 88, 483, 542, 660, 891
HpaII CCGG 4 cut(s) 132, 224, 700, 704
HphI GGTGA 2 cut(s) 47, 382
Hpy166II GTNNAC 2 cut(s) 386, 610
Hpy188I TCNGA 8 cut(s) 84, 93, 202, 500, 508, 724, 815, 974
Hpy188III TCNNGA 6 cut(s) 132, 141, 664, 911, 944, 978
Hpy8I GTNNAC 2 cut(s) 386, 610
Hpy99I CGWCG 2 cut(s) 29, 129
HpyAV CCTTC 5 cut(s) 26, 149, 485, 511, 736
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 554, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 788, 824, 914
HpyF3I CTNAG 1 cut(s) 942
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 381, 554, 981
HspAI GCGC 1 cut(s) 164
Kpn2I TCCGGA 1 cut(s) 131
KpnI GGTACC 1 cut(s) 710
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 4 cut(s) 60, 423, 966, 974
LmnI GCTCC 8 cut(s) 75, 134, 247, 440, 448, 588, 646, 815
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 3 cut(s) 193, 512, 791
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 299, 370
MalI GATC 4 cut(s) 62, 425, 968, 976
MboI GATC 4 cut(s) 60, 423, 966, 974
MboII GAAGA 7 cut(s) 58, 113, 116, 200, 239, 467, 667
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 3 cut(s) 252, 445, 820
MluCI AATT 3 cut(s) 108, 259, 271
MlyI GAGTC 3 cut(s) 551, 654, 900
MmeI TCCRAC 4 cut(s) 88, 793, 868, 901
MroI TCCGGA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 270, 897
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 4 cut(s) 132, 224, 700, 704
MspR9I CCNGG 3 cut(s) 447, 467, 480
MvaI CCWGG 3 cut(s) 447, 467, 480
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 788, 824, 914
NdeI CATATG 1 cut(s) 408
NdeII GATC 4 cut(s) 60, 423, 966, 974
NlaIII CATG 3 cut(s) 381, 554, 981
NlaIV GGNNCC 4 cut(s) 62, 71, 708, 925
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 554
PagI TCATGA 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 3 cut(s) 49, 88, 483
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 4 cut(s) 16, 19, 168, 399
PleI GAGTC 3 cut(s) 550, 654, 899
PpsI GAGTC 3 cut(s) 550, 654, 899
Psp124BI GAGCTC 2 cut(s) 252, 445
Psp6I CCWGG 3 cut(s) 445, 465, 478
PspGI CCWGG 3 cut(s) 445, 465, 478
PspN4I GGNNCC 4 cut(s) 62, 71, 708, 925
PspPI GGNCC 4 cut(s) 148, 386, 683, 923
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 2 cut(s) 197, 708
RsaNI GTAC 2 cut(s) 196, 707
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 2 cut(s) 252, 445
SaqAI TTAA 2 cut(s) 270, 897
SatI GCNGC 4 cut(s) 15, 18, 167, 398
Sau3AI GATC 4 cut(s) 60, 423, 966, 974
Sau96I GGNCC 4 cut(s) 148, 386, 683, 923
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 3 cut(s) 551, 654, 900
ScrFI CCNGG 3 cut(s) 447, 467, 480
SduI GDGCHC 3 cut(s) 252, 445, 820
SfaNI GCATC 3 cut(s) 193, 512, 791
SinI GGWCC 2 cut(s) 386, 923
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 3 cut(s) 662, 857, 909
SmoI CTYRAG 3 cut(s) 662, 857, 909
Sse9I AATT 3 cut(s) 108, 259, 271
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 2 cut(s) 252, 445
StyD4I CCNGG 3 cut(s) 445, 465, 478
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 108, 259, 271
TatI WGTACW 1 cut(s) 195
TauI GCSGC 3 cut(s) 17, 20, 169
TfiI GAWTC 3 cut(s) 49, 88, 483
Tru1I TTAA 2 cut(s) 270, 897
Tru9I TTAA 2 cut(s) 270, 897
TscAI CASTG 1 cut(s) 825
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 4 cut(s) 45, 101, 371, 395
TspRI CASTG 1 cut(s) 825
VpaK11BI GGWCC 2 cut(s) 386, 923
XceI RCATGY 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.