Rmu_co8169716.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8169716.1
OG0000592
Physical Location & Seq
Reverse (-)
1 .. 582
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8169716.1_g000001.1.cds

Sequence Viewer

Length: 502 bp
atgagccacaaagttgctagttctagtcctcaaaatgttgcagtcttagtttttccattcgcctcccatcccggctctcttctccgatttgtacgttcgatttcaactgtggccccagacatgcagttcaccttcttcaacacatctagatcaaatagctccctcttctcgagttccggcaaaaaggattgtggtaatgtaaagccatacaacgtatgggatggcttgccagatgactacatacccctctccagaaatccgctgcagcaaattgagttgttccttgacaatgcacttggtagcttcgagaaggcaatcaaagaggtggaggctgaaacaggacacaagttcggctgcttgatttcagatgcattcctctggtttgccggtgacatagccgaaaagatgcacgtctcttgggtgcccttatggatctgtggacaacgttcactgcttgttcatattgagactgatataattagagaaaaagtgggagctcttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

167

Amino Acids

18.55

Weight (kDa)

6.18

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 1 cut(s) 260
AclI AACGTT 1 cut(s) 445
AclWI GGATC 1 cut(s) 440
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 2 cut(s) 105, 139
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 3 cut(s) 159, 303, 497
AluI AGCT 3 cut(s) 159, 303, 497
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 418, 461
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 262, 265, 354
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 121, 401
AvaI CYCGRG 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 249, 277, 341
BccI CCATC 2 cut(s) 75, 215
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 418, 461
BfaI CTAG 3 cut(s) 18, 24, 147
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 3 cut(s) 263, 266, 355
BlsI GCNGC 3 cut(s) 264, 267, 356
Bme1390I CCNGG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 114, 423
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 358, 396
BpmI CTGGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 386
BseGI GGATG 2 cut(s) 67, 226
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 3 cut(s) 249, 277, 341
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 3 cut(s) 72, 177, 387
BsmAI GTCTC 2 cut(s) 418, 461
BsmBI CGTCTC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 426, 499
Bsp143I GATC 2 cut(s) 149, 432
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 114, 423
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 386
BssMI GATC 2 cut(s) 149, 432
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 84, 170
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 67, 226
BstKTI GATC 2 cut(s) 152, 435
BstMAI GTCTC 2 cut(s) 418, 461
BstMBI GATC 2 cut(s) 149, 432
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 249, 277, 341
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 1 cut(s) 113
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 226
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 121
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 151, 434
DpnII GATC 2 cut(s) 149, 432
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
Ecl136II GAGCTC 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 1 cut(s) 124
FaiI YATR 8 cut(s) 122, 208, 217, 242, 395, 430, 462, 476
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 263, 266, 355
FokI GGATG 2 cut(s) 54, 233
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 263, 266, 355
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 3 cut(s) 263, 266, 355
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 1 cut(s) 113
HapII CCGG 3 cut(s) 72, 177, 387
Hin1II CATG 1 cut(s) 124
HpaII CCGG 3 cut(s) 72, 177, 387
HphI GGTGA 2 cut(s) 121, 401
Hpy166II GTNNAC 3 cut(s) 129, 440, 449
Hpy188I TCNGA 2 cut(s) 86, 367
Hpy188III TCNNGA 4 cut(s) 147, 169, 252, 307
Hpy8I GTNNAC 3 cut(s) 129, 440, 449
HpyAV CCTTC 2 cut(s) 142, 304
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 4 cut(s) 94, 213, 411, 445
HpyCH4V TGCA 6 cut(s) 41, 124, 265, 293, 371, 409
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 4 cut(s) 94, 213, 411, 445
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 149, 432
LmnI GCTCC 2 cut(s) 164, 494
LpnPI CCDG 8 cut(s) 85, 129, 190, 243, 265, 324, 364, 400
Lsp1109I GCAGC 3 cut(s) 249, 277, 341
LweI GCATC 2 cut(s) 358, 396
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 411, 445
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 151, 434
MboI GATC 2 cut(s) 149, 432
MboII GAAGA 3 cut(s) 71, 127, 157
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 2 cut(s) 426, 499
MluCI AATT 2 cut(s) 270, 477
MnlI CCTC 7 cut(s) 39, 73, 173, 257, 316, 322, 386
Mph1103I ATGCAT 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 72, 177, 387
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 371
NciI CCSGG 1 cut(s) 72
NdeII GATC 2 cut(s) 149, 432
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 114, 423
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 169
PctI GAATGC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 264, 267, 356
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 114, 423
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 499
SatI GCNGC 3 cut(s) 263, 266, 355
Sau3AI GATC 2 cut(s) 149, 432
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 426, 499
SetI ASST 9 cut(s) 97, 134, 161, 216, 305, 327, 414, 448, 499
SfaNI GCATC 2 cut(s) 358, 396
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 2 cut(s) 270, 477
SsiI CCGC 1 cut(s) 260
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 4 cut(s) 97, 216, 414, 448
TaqI TCGA 3 cut(s) 98, 170, 306
TasI AATT 2 cut(s) 270, 477
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 3 cut(s) 262, 265, 354
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 3 cut(s) 18, 24, 147
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.