Rh4AG045700

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
9602465 .. 9603236
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG045700.1

Sequence Viewer

Length: 249 bp
ATGATTGGGAGGCCTCATTTTGCTGATGAAATTCTGAATATGCGGAGCGTAGCAGTTGTATGGAAGATCAGTATGAGAATCGAGGGTGGCGTTTTCACTAAATCTGGAGCAATTAAGGTATTGGAACAAGCTCTATCGCTTGAGCAAGGAAAAGAAATGAGACAGAGAGTTGGAGTACTTAAACAGCTTGCTCAAGAGACTGTTGGACCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

9.69

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 4 cut(s) 131, 187, 224, 239
AluI AGCT 4 cut(s) 131, 187, 224, 239
Alw26I GTCTC 2 cut(s) 154, 191
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 154, 191
BmcAI AGTACT 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 161, 177, 210
BshFI GGCC 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 154, 191
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 208
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 2 cut(s) 154, 191
BstMBI GATC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 176
CviJI RGCY 6 cut(s) 13, 131, 187, 224, 239, 245
CviKI_1 RGCY 6 cut(s) 13, 131, 187, 224, 239, 245
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 206
FaiI YATR 3 cut(s) 41, 61, 74
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 13
HinfI GANTC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 105, 194, 227
HpyCH4III ACNGT 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 246
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 45, 107
LpnPI CCDG 2 cut(s) 90, 227
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 76
MluCI AATT 2 cut(s) 30, 111
MmeI TCCRAC 2 cut(s) 151, 184
MnlI CCTC 3 cut(s) 3, 24, 76
MseI TTAA 2 cut(s) 114, 180
NdeII GATC 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 114, 180
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 177
SetI ASST 5 cut(s) 120, 133, 189, 226, 241
SgeI CNNG 9 cut(s) 94, 117, 140, 152, 158, 200, 206, 239, 244
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 3 cut(s) 140, 192, 225
SmoI CTYRAG 3 cut(s) 140, 192, 225
Sse9I AATT 2 cut(s) 30, 111
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 1 cut(s) 43
StuI AGGCCT 1 cut(s) 13
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 30, 111
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 114, 180
Tru9I TTAA 2 cut(s) 114, 180
TspDTI ATGAA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.