FvH4_4g09980

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000592
Physical Location & Seq
Forward (+)
12302511 .. 12304118
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09980.t1

Sequence Viewer

Length: 1026 bp
ATGGCCTTCCCTTTCGGCACCCATGCAGGCCCTCTTCTAAGCCTCGTTCTTCGGCTCGCTGCCGCTAAACCCGACACAATCTTCTCCTTCATCACAACTTCTAAAGCCAACAGCTCCCTCTTCTCTCAAACCTCCAAGGCCTCCGCCTTCCTTAACGTTAAGGCCTACGACGTCCCCGATGGGTTACCAGAGGGTTTCGTGCTCTCCGGCCACTCGGAGCAGCTTATTGGCTTCTTTCTCAAACCGACCAACTTTAGGATTGTGATGAAGGAGGCTGAGGCGGGCTCCGGGCTTAAGATAGGGTACTTGATACGACAAAGGGTACTTGGAACCGGTGGAAATGCAGTGAAAACCCTTGAGTTCCTTCCTGGATTTTCTAAACTTGAGGTTGTTGATTTACTTGAGGGAGTCGTATTAGGGAATTTGGAGTCACCAATATCATCCCTGTTACACAAGATGGGACAAGAGCTGCCAAAGGCGGCAGCGGTTGCCATTAACTCATTCGAAGAAGCAGAACCGGACATGGTGAACGAGCTCAAATCAAGATTCAAGAAGTTTCTCAATGTTGGACCCTTCAATCTTGCATCGGCGTCGCCGCCATTGCTCGAGGACGACAGCGGTTGCTTGGAGTGGTTGGACAAGCATAAGCCTGCATCTGTGGTATATATTAGCTTTGGAAGTGTGGTGAGTCCACCACCTCATGAGCTACCAACATTTGCAGAAGCCTTGGCTGAAAGTGGGTTCCCATTTATTTGGTCATTTAGGGGCAACCCAGATGAGATATTGCCCAATGGGTGTGACAAGAGTAGCCTAAATGGGAAAATAGTTTCATGGGCACCGCAGGTACAAATTTTAGAGCATGCTGCGGTTGGAGTTTTTCTGACACATTGCGGGTGGAACTCCATTTTGGAGAGTATAGTTGGTGGTGTGCCTATGATGCCCTATGATATGCCGGCCATTTTTTGGGGATCAAAACCTGAACATGAAGACTGTGGAGGTTGTTTGGGGGATTGGTGTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

342

Amino Acids

36.68

Weight (kDa)

5.22

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 219 - 313 4.9e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 832
AccB1I GGYRCC 2 cut(s) 17, 835
AccB7I CCANNNNNTGG 1 cut(s) 963
AclI AACGTT 1 cut(s) 156
AclWI GGATC 1 cut(s) 976
AcoI YGGCCR 2 cut(s) 208, 954
AcsI RAATTY 2 cut(s) 421, 849
AcyI GRCGYC 2 cut(s) 171, 590
AfaI GTAC 3 cut(s) 305, 324, 846
AfiI CCNNNNNNNGG 2 cut(s) 255, 963
AflII CTTAAG 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 550, 577
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AluBI AGCT 6 cut(s) 114, 223, 469, 535, 672, 706
AluI AGCT 6 cut(s) 114, 223, 469, 535, 672, 706
Alw21I GWGCWC 2 cut(s) 204, 537
AlwI GGATC 1 cut(s) 976
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 6 cut(s) 3, 28, 138, 162, 208, 954
ApeKI GCWGC 5 cut(s) 59, 220, 469, 482, 863
ApoI RAATTY 2 cut(s) 421, 849
AsiGI ACCGGT 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 29, 569
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 423, 538, 697
AsuII TTCGAA 1 cut(s) 504
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 838
BanI GGYRCC 2 cut(s) 17, 835
BanII GRGCYC 2 cut(s) 287, 537
BbsI GAAGAC 1 cut(s) 993
Bbv12I GWGCWC 2 cut(s) 204, 537
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 5 cut(s) 46, 232, 456, 494, 850
BccI CCATC 2 cut(s) 173, 451
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 289
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 832
BisI GCNGC 8 cut(s) 60, 63, 221, 470, 480, 483, 596, 864
BlsI GCNGC 8 cut(s) 61, 64, 222, 471, 481, 484, 597, 865
Bme1390I CCNGG 2 cut(s) 289, 369
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 2 cut(s) 29, 569
BmiI GGNNCC 6 cut(s) 19, 286, 331, 571, 743, 837
BmrFI CCNGG 2 cut(s) 289, 369
BmsI GCATC 3 cut(s) 593, 662, 927
BpiI GAAGAC 1 cut(s) 993
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 504
BpuEI CTTGAG 3 cut(s) 377, 404, 422
BpuMI CCSGG 1 cut(s) 289
BsaHI GRCGYC 2 cut(s) 171, 590
BsaJI CCNNGG 2 cut(s) 135, 726
BsaWI WCCGGW 2 cut(s) 332, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 963
Bse118I RCCGGY 2 cut(s) 332, 952
Bse3DI GCAATG 2 cut(s) 599, 886
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 135, 726
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 255, 963
BseMI GCAATG 2 cut(s) 599, 886
BseMII CTCAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 5 cut(s) 46, 232, 456, 494, 850
BshFI GGCC 6 cut(s) 5, 30, 140, 164, 210, 956
BshNI GGYRCC 2 cut(s) 17, 835
BshTI ACCGGT 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 204, 537
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 5 cut(s) 207, 288, 333, 518, 953
BslFI GGGAC 2 cut(s) 158, 474
BslI CCNNNNNNNGG 2 cut(s) 255, 963
BsmFI GGGAC 2 cut(s) 158, 474
BsnI GGCC 6 cut(s) 5, 30, 140, 164, 210, 956
BsoBI CYCGRG 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 504
Bsp1286I GDGCHC 4 cut(s) 204, 287, 537, 838
Bsp143I GATC 1 cut(s) 968
BspANI GGCC 6 cut(s) 5, 30, 140, 164, 210, 956
BspCNI CTCAG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 6 cut(s) 19, 286, 331, 571, 743, 837
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 1 cut(s) 976
BspT104I TTCGAA 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 17, 835
BspTI CTTAAG 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 599, 886
BsrFI RCCGGY 2 cut(s) 332, 952
BssAI RCCGGY 2 cut(s) 332, 952
BssECI CCNNGG 2 cut(s) 135, 726
BssMI GATC 1 cut(s) 968
BssNI GRCGYC 2 cut(s) 171, 590
BssT1I CCWWGG 2 cut(s) 135, 726
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 2 cut(s) 39, 125
BstACI GRCGYC 2 cut(s) 171, 590
BstAFI CTTAAG 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 504
BstC8I GCNNGC 6 cut(s) 28, 57, 283, 651, 861, 954
BstDEI CTNAG 2 cut(s) 38, 276
BstEII GGTNACC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 440
BstKTI GATC 1 cut(s) 971
BstMBI GATC 1 cut(s) 968
BstMWI GCNNNNNNNGC 3 cut(s) 488, 601, 937
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 863
BstPI GGTNACC 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 287, 367
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 5 cut(s) 46, 232, 456, 494, 850
BstV2I GAAGAC 1 cut(s) 993
BstXI CCANNNNNNTGG 1 cut(s) 753
BsuRI GGCC 6 cut(s) 5, 30, 140, 164, 210, 956
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 6 cut(s) 28, 57, 283, 651, 861, 954
CciI TCATGA 1 cut(s) 700
Cfr10I RCCGGY 2 cut(s) 332, 952
Cfr13I GGNCC 2 cut(s) 29, 569
CseI GACGC 1 cut(s) 579
Csp6I GTAC 3 cut(s) 304, 323, 845
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 6 cut(s) 23, 523, 701, 831, 860, 983
CviQI GTAC 3 cut(s) 304, 323, 845
DdeI CTNAG 2 cut(s) 38, 276
DpnI GATC 1 cut(s) 970
DpnII GATC 1 cut(s) 968
EaeI YGGCCR 2 cut(s) 208, 954
Eam1104I CTCTTC 2 cut(s) 39, 125
EarI CTCTTC 2 cut(s) 39, 125
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 135, 726
Eco147I AGGCCT 2 cut(s) 140, 164
Eco24I GRGCYC 2 cut(s) 287, 537
Eco47I GGWCC 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 605
Eco91I GGTNACC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 2 cut(s) 135, 726
EcoT38I GRGCYC 2 cut(s) 287, 537
ErhI CCWWGG 2 cut(s) 135, 726
FaeI CATG 6 cut(s) 26, 526, 704, 834, 863, 986
FaqI GGGAC 2 cut(s) 158, 474
FatI CATG 6 cut(s) 22, 522, 700, 830, 859, 982
FauI CCCGC 2 cut(s) 274, 884
Fnu4HI GCNGC 8 cut(s) 60, 63, 221, 470, 480, 483, 596, 864
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 2 cut(s) 287, 537
Fsp4HI GCNGC 8 cut(s) 60, 63, 221, 470, 480, 483, 596, 864
GluI GCNGC 8 cut(s) 60, 63, 221, 470, 480, 483, 596, 864
HaeIII GGCC 6 cut(s) 5, 30, 140, 164, 210, 956
HapII CCGG 5 cut(s) 207, 288, 333, 518, 953
HgaI GACGC 1 cut(s) 579
Hin1I GRCGYC 2 cut(s) 171, 590
Hin1II CATG 6 cut(s) 26, 526, 704, 834, 863, 986
HinfI GANTC 4 cut(s) 408, 428, 546, 688
HpaII CCGG 5 cut(s) 207, 288, 333, 518, 953
HphI GGTGA 3 cut(s) 423, 538, 697
Hpy166II GTNNAC 2 cut(s) 529, 692
Hpy188I TCNGA 2 cut(s) 217, 882
Hpy188III TCNNGA 3 cut(s) 543, 550, 701
Hpy8I GTNNAC 2 cut(s) 529, 692
Hpy99I CGWCG 2 cut(s) 173, 595
HpyAV CCTTC 6 cut(s) 16, 97, 157, 262, 374, 583
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4IV ACGT 2 cut(s) 156, 171
HpyCH4V TGCA 5 cut(s) 26, 344, 584, 653, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 601, 937
HpyF3I CTNAG 2 cut(s) 38, 276
HpySE526I ACGT 2 cut(s) 156, 171
Hsp92I GRCGYC 2 cut(s) 171, 590
Hsp92II CATG 6 cut(s) 26, 526, 704, 834, 863, 986
KroI GCCGGC 1 cut(s) 952
KroNI GCCGGC 1 cut(s) 954
Kzo9I GATC 1 cut(s) 968
LmnI GCTCC 3 cut(s) 119, 217, 290
Lsp1109I GCAGC 5 cut(s) 46, 232, 456, 494, 850
LweI GCATC 3 cut(s) 593, 662, 927
MaeII ACGT 2 cut(s) 156, 171
MaeIII GTNAC 4 cut(s) 183, 429, 447, 797
MalI GATC 1 cut(s) 970
MboI GATC 1 cut(s) 968
MboII GAAGA 6 cut(s) 26, 41, 73, 112, 518, 998
MhlI GDGCHC 4 cut(s) 204, 287, 537, 838
MluCI AATT 3 cut(s) 421, 849, 1021
MlyI GAGTC 3 cut(s) 417, 437, 697
MmeI TCCRAC 3 cut(s) 547, 615, 850
MroNI GCCGGC 1 cut(s) 952
MseI TTAA 4 cut(s) 153, 159, 294, 495
MspA1I CMGCKG 2 cut(s) 485, 618
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 5 cut(s) 207, 288, 333, 518, 953
MspR9I CCNGG 2 cut(s) 289, 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 488, 601, 937
NaeI GCCGGC 1 cut(s) 954
NciI CCSGG 1 cut(s) 289
NdeII GATC 1 cut(s) 968
NgoMIV GCCGGC 1 cut(s) 952
NlaIII CATG 6 cut(s) 26, 526, 704, 834, 863, 986
NlaIV GGNNCC 6 cut(s) 19, 286, 331, 571, 743, 837
NmuCI GTSAC 2 cut(s) 429, 797
NspI RCATGY 1 cut(s) 863
NspV TTCGAA 1 cut(s) 504
PaeI GCATGC 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 605
PagI TCATGA 1 cut(s) 700
PceI AGGCCT 2 cut(s) 140, 164
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 954
PfeI GAWTC 1 cut(s) 546
PflMI CCANNNNNTGG 1 cut(s) 963
PfoI TCCNGGA 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 8 cut(s) 61, 64, 222, 471, 481, 484, 597, 865
PleI GAGTC 3 cut(s) 416, 436, 696
PpsI GAGTC 3 cut(s) 416, 436, 696
Psp124BI GAGCTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 6 cut(s) 19, 286, 331, 571, 743, 837
PspPI GGNCC 2 cut(s) 29, 569
PspXI VCTCGAGB 1 cut(s) 605
RsaI GTAC 3 cut(s) 305, 324, 846
RsaNI GTAC 3 cut(s) 304, 323, 845
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 4 cut(s) 153, 159, 294, 495
SatI GCNGC 8 cut(s) 60, 63, 221, 470, 480, 483, 596, 864
Sau3AI GATC 1 cut(s) 968
Sau96I GGNCC 2 cut(s) 29, 569
SchI GAGTC 3 cut(s) 417, 437, 697
ScrFI CCNGG 2 cut(s) 289, 369
SduI GDGCHC 4 cut(s) 204, 287, 537, 838
SfaNI GCATC 3 cut(s) 593, 662, 927
Sfr274I CTCGAG 1 cut(s) 605
SfuI TTCGAA 1 cut(s) 504
SinI GGWCC 1 cut(s) 569
SlaI CTCGAG 1 cut(s) 605
SmlI CTYRAG 5 cut(s) 293, 356, 383, 401, 605
SmoI CTYRAG 5 cut(s) 293, 356, 383, 401, 605
SphI GCATGC 1 cut(s) 863
Sse9I AATT 3 cut(s) 421, 849, 1021
SseBI AGGCCT 2 cut(s) 140, 164
SstI GAGCTC 1 cut(s) 537
StuI AGGCCT 2 cut(s) 140, 164
StyD4I CCNGG 2 cut(s) 287, 367
StyI CCWWGG 2 cut(s) 135, 726
TaaI ACNGT 1 cut(s) 992
TaiI ACGT 2 cut(s) 159, 174
TaqI TCGA 2 cut(s) 504, 606
TasI AATT 3 cut(s) 421, 849, 1021
TauI GCSGC 3 cut(s) 65, 482, 598
TfiI GAWTC 1 cut(s) 546
Tru1I TTAA 4 cut(s) 153, 159, 294, 495
Tru9I TTAA 4 cut(s) 153, 159, 294, 495
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 2 cut(s) 429, 797
TseI GCWGC 5 cut(s) 59, 220, 469, 482, 863
Tsp45I GTSAC 2 cut(s) 429, 797
TspDTI ATGAA 4 cut(s) 79, 281, 819, 999
TspRI CASTG 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 963
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 2 cut(s) 421, 849
XceI RCATGY 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 605
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.