Rorug04G0002600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000592
Physical Location & Seq
Reverse (-)
526408 .. 527856
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0002600.1

Sequence Viewer

Length: 1449 bp
ATGAAAAAGTATCTTCATTCTAGTTCTTTGTTGCAGAATAATTATAAAAAGCCCTTGAATTGCTCTAGTACGTGGTCTGGTATTGTCTATGGAGCTGATCTCTTGAGGAAAGGTTTAAGCTGGAGAATTGGAAATGGTGTTAAGGCCAAGTTTTGGACTGATAAGTGGTCTCCTTGTGGTATTCTTAAGAATTATGCTCTAAATCATGATACCATTGATTTAAATTCCTCTGTTCAAAACTTTTGGATTGACAGGAGATGGAACCTGCCTATGTTACTAGACAATCTTCCTATTAAGATTGTGGACAAAATCATTGCTATCCCTATTGTTGGCCGTGGTCTTCCTGATCAAGTTATATGGGGAAATACGTCCTCTGGGTTGTTTTATGTCAAATCTGCCTACCGAATTCTCTGTGATGAGCAGGGATTTCATAATTACTGTTGGTTGAAAAATTGGTCTCTCCCTATCCCTCCCAAGCTCAAGATCTTTCTATGGTCCTTTGTTTCAGGTAAGCTTTTAACTAATGAACAGCAGTTTAAACGACGGTTCACCTCTAATCCTTCTTGCCAGGTCTGCACAAGTGCTCAGGAAACTATGTTACATCTTTTTCGTGACTGCCCCATGGCTAAACAGGTTTGGCAATCCTTTGATATCCCTGCTAACATGCTAGCGACTTTCAATTTAAATTGGGAGGATTGGATATTTGCCAACTTATTACAAAAAGGATACCATATGAACAACCTGAGCTGGAATATCTTTTTCATTTTCTGTTGCTGGTTCATCTGGAAATGGAGATGCAAGAATGTGTTTGACGTTGGTTTTCATTATCCTTATAACCCCCCTGATGTCATATATAGCTATGCCACTGAATGGTCTAAAGCTACTGCCAAGGCTAATGTTAGTTTGGCTAGAAATGTTGAAATGCTATCTTGGCTTAAACCTGCTGCTGGTAATCATAAGCTCAACGTTGATGGCTCAAGAGTCAGTTCGAGTGCTATTGGTGCAGGTGGTGTTATAAGGGATGACTCGGGGTCCTGGTGTGGTGGTTTTATGGTCAATATTGGTGCTGGTGAGGTTTTACAAGCTGAATCTTGGGGTCTTTTTCATGTCCTGCAGCTGTCTTTGAGTTTAAGGATCACTAAATTGGAAGTTGTGTCTGATTACTTTGTGCTTATCAATCTTATCCATAGTGACAATATTGATCTTCACCCCCTAGGGACCTTGATCATGAACTGCAGAAGTCTGATGCAAGAGTTTGAGTTCAGTCAGATTAAGCACATTCATCTTGAGCGTAATCTGGTTCCAGACGTTCTGGCTAAGAACAATATCCTCCATGCCAAAGGAATCTGCATTTTGCATGACCCTCTTGCCTTGATTACTGAATATTTGTTGGACGATATTGTTGGGCCTCCTAGAGCTAGAGGTTTTATGGCCAGCTGTGCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

482

Amino Acids

55.01

Weight (kDa)

8.88

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 128 - 213 5.7e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 322 - 440 2.1e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 45, 834, 1016
AarI CACCTGC 1 cut(s) 995
Acc36I ACCTGC 3 cut(s) 273, 949, 995
AccB7I CCANNNNNTGG 2 cut(s) 153, 870
AclI AACGTT 1 cut(s) 966
AclWI GGATC 1 cut(s) 1142
AcoI YGGCCR 2 cut(s) 331, 1431
AcsI RAATTY 2 cut(s) 223, 405
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 4 cut(s) 153, 329, 870, 947
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 58, 236, 448, 679, 920
AhdI GACNNNNNGTC 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 567, 1034
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 2 cut(s) 174, 462
AlwI GGATC 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 1027
AoxI GGCC 4 cut(s) 144, 331, 1406, 1431
ApeKI GCWGC 2 cut(s) 944, 1114
ApoI RAATTY 2 cut(s) 223, 405
AspA2I CCTAGG 1 cut(s) 1213
AspS9I GGNCC 4 cut(s) 495, 1032, 1218, 1406
AsuHPI GGTGA 3 cut(s) 541, 1082, 1199
AsuNHI GCTAGC 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 1027
AvaII GGWCC 3 cut(s) 495, 1032, 1218
AvrII CCTAGG 1 cut(s) 1213
BalI TGGCCA 1 cut(s) 1433
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 931, 1126
BccI CCATC 2 cut(s) 252, 965
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 2 cut(s) 569, 1036
BciVI GTATCC 1 cut(s) 719
BclI TGATCA 2 cut(s) 346, 1224
BcoDI GTCTC 2 cut(s) 174, 462
BfaI CTAG 9 cut(s) 21, 66, 278, 668, 909, 1214, 1413, 1419, 1447
BfmI CTRYAG 2 cut(s) 1112, 1234
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 3 cut(s) 273, 949, 995
BfuI GTATCC 1 cut(s) 719
BglII AGATCT 1 cut(s) 483
BisI GCNGC 2 cut(s) 945, 1115
BlnI CCTAGG 1 cut(s) 1213
BlsI GCNGC 2 cut(s) 946, 1116
Bme1390I CCNGG 2 cut(s) 569, 1036
Bme18I GGWCC 3 cut(s) 495, 1032, 1218
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 1027
BmgT120I GGNCC 4 cut(s) 495, 1032, 1218, 1406
BmiI GGNNCC 4 cut(s) 263, 1033, 1219, 1302
BmrFI CCNGG 2 cut(s) 569, 1036
BmsI GCATC 2 cut(s) 785, 1236
BmtI GCTAGC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpmI CTGGAG 1 cut(s) 142
Bpu10I CCTNAGC 2 cut(s) 585, 743
BpuEI CTTGAG 4 cut(s) 124, 464, 961, 1307
BsaAI YACGTR 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 174, 462
BsaJI CCNNGG 4 cut(s) 334, 621, 888, 1213
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 329, 870, 947
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 569, 1036
BseDI CCNNGG 4 cut(s) 334, 621, 888, 1213
BseGI GGATG 1 cut(s) 1027
BseLI CCNNNNNNNGG 4 cut(s) 153, 329, 870, 947
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 599, 734
BseXI GCAGC 2 cut(s) 931, 1126
BsgI GTGCAG 2 cut(s) 559, 1023
BshFI GGCC 4 cut(s) 146, 333, 1408, 1433
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 1027
BslFI GGGAC 1 cut(s) 1231
BslI CCNNNNNNNGG 4 cut(s) 153, 329, 870, 947
BsmAI GTCTC 2 cut(s) 174, 462
BsmFI GGGAC 1 cut(s) 1231
BsnI GGCC 4 cut(s) 146, 333, 1408, 1433
Bso31I GGTCTC 2 cut(s) 174, 462
BsoBI CYCGRG 1 cut(s) 1027
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 4 cut(s) 146, 333, 1408, 1433
BspCNI CTCAG 2 cut(s) 598, 735
BspHI TCATGA 2 cut(s) 205, 1227
BspLI GGNNCC 4 cut(s) 263, 1033, 1219, 1302
BspMAI CTGCAG 2 cut(s) 1116, 1238
BspMI ACCTGC 3 cut(s) 273, 949, 995
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 1142
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 2 cut(s) 174, 462
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 334, 621, 888, 1213
BssMI GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
BssT1I CCWWGG 3 cut(s) 621, 888, 1213
Bst2UI CCWGG 2 cut(s) 569, 1036
Bst4CI ACNGT 2 cut(s) 440, 546
BstAFI CTTAAG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 669, 1435, 1444
BstDEI CTNAG 3 cut(s) 585, 743, 1317
BstDSI CCRYGG 2 cut(s) 334, 621
BstF5I GGATG 1 cut(s) 1027
BstKTI GATC 6 cut(s) 100, 349, 486, 1137, 1204, 1227
BstMAI GTCTC 2 cut(s) 174, 462
BstMBI GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
BstMWI GCNNNNNNNGC 5 cut(s) 573, 931, 1001, 1439, 1443
BstNI CCWGG 2 cut(s) 569, 1036
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 567, 1034
BstSFI CTRYAG 2 cut(s) 1112, 1234
BstV1I GCAGC 2 cut(s) 931, 1126
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 719
BsuRI GGCC 4 cut(s) 146, 333, 1408, 1433
BtgI CCRYGG 2 cut(s) 334, 621
BtsCI GGATG 1 cut(s) 1027
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 3 cut(s) 273, 949, 995
Cac8I GCNNGC 3 cut(s) 669, 1435, 1444
CciI TCATGA 2 cut(s) 205, 1227
Cfr13I GGNCC 4 cut(s) 495, 1032, 1218, 1406
Csp6I GTAC 1 cut(s) 69
CviAII CATG 7 cut(s) 206, 622, 664, 1106, 1228, 1334, 1358
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 3 cut(s) 585, 743, 1317
DpnI GATC 6 cut(s) 99, 348, 485, 1136, 1203, 1226
DpnII GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
DraI TTTAAA 3 cut(s) 222, 538, 684
DriI GACNNNNNGTC 1 cut(s) 1030
EaeI YGGCCR 2 cut(s) 331, 1431
Eam1105I GACNNNNNGTC 1 cut(s) 1030
Eco130I CCWWGG 3 cut(s) 621, 888, 1213
Eco31I GGTCTC 2 cut(s) 174, 462
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 3 cut(s) 495, 1032, 1218
Eco88I CYCGRG 1 cut(s) 1027
EcoO109I RGGNCCY 2 cut(s) 1032, 1218
EcoRI GAATTC 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 567, 1034
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 3 cut(s) 621, 888, 1213
ErhI CCWWGG 3 cut(s) 621, 888, 1213
FaeI CATG 7 cut(s) 209, 625, 667, 1109, 1231, 1337, 1361
FaqI GGGAC 1 cut(s) 1231
FatI CATG 7 cut(s) 205, 621, 663, 1105, 1227, 1333, 1357
FauNDI CATATG 1 cut(s) 732
FbaI TGATCA 2 cut(s) 346, 1224
Fnu4HI GCNGC 2 cut(s) 945, 1115
FokI GGATG 1 cut(s) 1034
Fsp4HI GCNGC 2 cut(s) 945, 1115
FspBI CTAG 9 cut(s) 21, 66, 278, 668, 909, 1214, 1413, 1419, 1447
GluI GCNGC 2 cut(s) 945, 1115
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 4 cut(s) 146, 333, 1408, 1433
Hin1II CATG 7 cut(s) 209, 625, 667, 1109, 1231, 1337, 1361
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 981, 1025, 1088, 1344
HphI GGTGA 3 cut(s) 541, 1082, 1199
Hpy166II GTNNAC 2 cut(s) 304, 549
Hpy188I TCNGA 3 cut(s) 1159, 1245, 1269
Hpy8I GTNNAC 2 cut(s) 304, 549
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 440, 546
HpyCH4IV ACGT 5 cut(s) 71, 368, 813, 966, 1308
HpyCH4V TGCA 9 cut(s) 34, 576, 798, 1004, 1114, 1236, 1249, 1350, 1357
HpyF10VI GCNNNNNNNGC 5 cut(s) 573, 931, 1001, 1439, 1443
HpyF3I CTNAG 3 cut(s) 585, 743, 1317
HpySE526I ACGT 5 cut(s) 71, 368, 813, 966, 1308
Hsp92II CATG 7 cut(s) 209, 625, 667, 1109, 1231, 1337, 1361
Ksp22I TGATCA 2 cut(s) 346, 1224
Kzo9I GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 931, 1126
LweI GCATC 2 cut(s) 785, 1236
MaeI CTAG 9 cut(s) 21, 66, 278, 668, 909, 1214, 1413, 1419, 1447
MaeII ACGT 5 cut(s) 71, 368, 813, 966, 1308
MaeIII GTNAC 4 cut(s) 273, 597, 611, 1190
MalI GATC 6 cut(s) 99, 348, 485, 1136, 1203, 1226
MboI GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
MboII GAAGA 4 cut(s) 5, 278, 332, 1196
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 1433
MluNI TGGCCA 1 cut(s) 1433
MlyI GAGTC 2 cut(s) 990, 1019
MmeI TCCRAC 1 cut(s) 1371
Mox20I TGGCCA 1 cut(s) 1433
MscI TGGCCA 1 cut(s) 1433
Msp20I TGGCCA 1 cut(s) 1433
MspA1I CMGCKG 2 cut(s) 1117, 1437
MspCI CTTAAG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 569, 1036
MssI GTTTAAAC 1 cut(s) 538
MvaI CCWGG 2 cut(s) 569, 1036
MwoI GCNNNNNNNGC 5 cut(s) 573, 931, 1001, 1439, 1443
NcoI CCATGG 1 cut(s) 621
NdeI CATATG 1 cut(s) 732
NdeII GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 7 cut(s) 209, 625, 667, 1109, 1231, 1337, 1361
NlaIV GGNNCC 4 cut(s) 263, 1033, 1219, 1302
NmuCI GTSAC 2 cut(s) 611, 1190
NspI RCATGY 1 cut(s) 667
PagI TCATGA 2 cut(s) 205, 1227
PaqCI CACCTGC 1 cut(s) 995
PfeI GAWTC 2 cut(s) 1088, 1344
PflMI CCANNNNNTGG 2 cut(s) 153, 870
PkrI GCNGC 2 cut(s) 946, 1116
PleI GAGTC 2 cut(s) 989, 1019
PmeI GTTTAAAC 1 cut(s) 538
PpsI GAGTC 2 cut(s) 989, 1019
Ppu21I YACGTR 1 cut(s) 72
PpuMI RGGWCCY 2 cut(s) 1032, 1218
PsiI TTATAA 3 cut(s) 45, 834, 1016
Psp1406I AACGTT 1 cut(s) 966
Psp5II RGGWCCY 2 cut(s) 1032, 1218
Psp6I CCWGG 2 cut(s) 567, 1034
PspGI CCWGG 2 cut(s) 567, 1034
PspN4I GGNNCC 4 cut(s) 263, 1033, 1219, 1302
PspPI GGNCC 4 cut(s) 495, 1032, 1218, 1406
PspPPI RGGWCCY 2 cut(s) 1032, 1218
PstI CTGCAG 2 cut(s) 1116, 1238
PsuI RGATCY 1 cut(s) 483
PvuII CAGCTG 2 cut(s) 1117, 1437
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 2 cut(s) 945, 1115
Sau3AI GATC 6 cut(s) 97, 346, 483, 1134, 1201, 1224
Sau96I GGNCC 4 cut(s) 495, 1032, 1218, 1406
SchI GAGTC 2 cut(s) 990, 1019
ScrFI CCNGG 2 cut(s) 569, 1036
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 785, 1236
SfcI CTRYAG 2 cut(s) 1112, 1234
SinI GGWCC 3 cut(s) 495, 1032, 1218
SmiI ATTTAAAT 2 cut(s) 222, 684
SmlI CTYRAG 5 cut(s) 103, 185, 479, 976, 1286
SmoI CTYRAG 5 cut(s) 103, 185, 479, 976, 1286
SspI AATATT 3 cut(s) 1060, 1198, 1385
SspMI CTAG 9 cut(s) 21, 66, 278, 668, 909, 1214, 1413, 1419, 1447
StyD4I CCNGG 2 cut(s) 567, 1034
StyI CCWWGG 3 cut(s) 621, 888, 1213
SwaI ATTTAAAT 2 cut(s) 222, 684
TaaI ACNGT 2 cut(s) 440, 546
TaiI ACGT 5 cut(s) 74, 371, 816, 969, 1311
TaqI TCGA 1 cut(s) 989
TfiI GAWTC 2 cut(s) 1088, 1344
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 611, 1190
TseI GCWGC 2 cut(s) 944, 1114
Tsp45I GTSAC 2 cut(s) 611, 1190
TspRI CASTG 1 cut(s) 871
Van91I CCANNNNNTGG 2 cut(s) 153, 870
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 3 cut(s) 495, 1032, 1218
XapI RAATTY 2 cut(s) 223, 405
XceI RCATGY 1 cut(s) 667
XmaJI CCTAGG 1 cut(s) 1213
XspI CTAG 9 cut(s) 21, 66, 278, 668, 909, 1214, 1413, 1419, 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.