Rmu_sc0004828.1_g000004

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004828.1
OG0000592
Physical Location & Seq
Forward (+)
21467 .. 21898
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004828.1_g000004.1.cds

Sequence Viewer

Length: 432 bp
atgagccacaaagttgctagtactagtcctcgaaatgttgccgtcttagtttttccattcacctcccatcccaccgctcttcttcgatttgtatgttccctttcaactgttgccccgtatatgcagttcaccttcttcaacatttctagatcaaatagctccctcttctcaggttccggcaacaagggctgtgataatataaagccttacaacgtatgggatggcttaccagatggttacatacctctctccagaaatccacaacgggagcacgttgagttgtttattgacaatgcacctcggatcttcgagagggtaatcaaagaggtggaggctgaaacaggacacatgtttggctgcttgatttcggatgcattattctggtttgctgcagacatagctgagaaaatgcacatcccttgggtgacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

6.5

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 311
AfaI GTAC 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 2 cut(s) 105, 139
AhlI ACTAGT 1 cut(s) 23
AluBI AGCT 2 cut(s) 159, 401
AluI AGCT 2 cut(s) 159, 401
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 357, 389
AsuHPI GGTGA 2 cut(s) 52, 121
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 344, 376
BccI CCATC 3 cut(s) 75, 215, 227
BceAI ACGGC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 18, 24, 147, 430
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 2 cut(s) 358, 390
BlsI GCNGC 2 cut(s) 359, 391
BmcAI AGTACT 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 299, 419
BseDI CCNNGG 2 cut(s) 299, 419
BseGI GGATG 4 cut(s) 67, 226, 376, 414
BseMII CTCAG 2 cut(s) 183, 393
BseXI GCAGC 2 cut(s) 344, 376
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 149, 303
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 182, 394
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 299, 419
BssMI GATC 2 cut(s) 149, 303
BssT1I CCWWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 84, 170
BstDEI CTNAG 3 cut(s) 46, 169, 402
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 4 cut(s) 67, 226, 376, 414
BstKTI GATC 2 cut(s) 152, 306
BstMBI GATC 2 cut(s) 149, 303
BstMWI GCNNNNNNNGC 2 cut(s) 186, 398
BstNSI RCATGY 1 cut(s) 352
BstPI GGTNACC 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 344, 376
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BtsCI GGATG 4 cut(s) 67, 226, 376, 414
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 349
CviJI RGCY 8 cut(s) 6, 159, 189, 205, 225, 335, 357, 401
CviKI_1 RGCY 8 cut(s) 6, 159, 189, 205, 225, 335, 357, 401
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 3 cut(s) 46, 169, 402
DpnI GATC 2 cut(s) 151, 305
DpnII GATC 2 cut(s) 149, 303
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
Eco130I CCWWGG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 352
FaiI YATR 8 cut(s) 94, 120, 122, 200, 217, 242, 350, 398
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 358, 390
FokI GGATG 4 cut(s) 54, 233, 383, 401
Fsp4HI GCNGC 2 cut(s) 358, 390
FspBI CTAG 4 cut(s) 18, 24, 147, 430
GluI GCNGC 2 cut(s) 358, 390
GsuI CTGGAG 1 cut(s) 235
HapII CCGG 1 cut(s) 177
Hin1II CATG 1 cut(s) 352
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 52, 121
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 303, 370
Hpy188III TCNNGA 3 cut(s) 147, 252, 310
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 213, 273
HpyCH4V TGCA 5 cut(s) 124, 296, 374, 392, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 398
HpyF3I CTNAG 3 cut(s) 46, 169, 402
HpySE526I ACGT 2 cut(s) 213, 273
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 2 cut(s) 149, 303
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 164, 268
LpnPI CCDG 6 cut(s) 156, 190, 243, 265, 327, 367
Lsp1109I GCAGC 2 cut(s) 344, 376
LweI GCATC 1 cut(s) 361
MaeI CTAG 4 cut(s) 18, 24, 147, 430
MaeII ACGT 2 cut(s) 213, 273
MaeIII GTNAC 2 cut(s) 236, 424
MalI GATC 2 cut(s) 151, 305
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 149, 303
MboII GAAGA 5 cut(s) 71, 74, 127, 157, 298
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 273
MnlI CCTC 8 cut(s) 39, 73, 173, 255, 306, 309, 319, 325
Mph1103I ATGCAT 1 cut(s) 376
MspI CCGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 186, 398
NdeII GATC 2 cut(s) 149, 303
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 359, 391
PscI ACATGT 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 84
SatI GCNGC 2 cut(s) 358, 390
Sau3AI GATC 2 cut(s) 149, 303
ScaI AGTACT 1 cut(s) 22
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 390
SpeI ACTAGT 1 cut(s) 23
SsiI CCGC 1 cut(s) 75
SspMI CTAG 4 cut(s) 18, 24, 147, 430
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 216, 276
TaqI TCGA 3 cut(s) 31, 85, 309
TatI WGTACW 1 cut(s) 20
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 2 cut(s) 357, 389
Tsp45I GTSAC 1 cut(s) 424
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 1 cut(s) 352
XspI CTAG 4 cut(s) 18, 24, 147, 430
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.