Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

12889803 .. 12892153

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTTTAGAGACCTAGAAGATTTTAATCTCGCCTTAATTGCTAAGCAGTGCTGGAGAAATTTACAAAACCCTAATGCAATTTGGGTGAAAGATTTAAAGGCTAGATATTTTCCGAAGTGCGATTTTCTCAACGCGGTTAAGGGTTTTAGAGCTTCTTGGGCTTGGTCAAGTTTGTTTGAAGGAAGAGACATCATTTTGAAGGGAGCGTTGGTAGAAGCTAAAGCAGTAATTGGCGGCCTCGATCTGGGTCACTGGCTCCATCTTTCATACATTTGTATTGAAAGTGATTCTCAAGTTTTAATTGCTGCTATTCGTCGCCGGTCTCTCAATTTCGTCGGCATGCGCTGGAGTTGGATCTTTCGTGAAGGGAATTATATTGCCCATGGGGTGGCCCTTTGCCAATCTAATGGTGGGTCTGCAAAGATGGGTAGATGGGCCGATAGGCCACCACCTTCTATTCTGCATGTTCTTAGTTCTAACGGTCTTCCTTGTGAAAATCCTTTGATACAGAAGATATGCCATGCAACCCCATATTATGATCTTTGCATATCCACCCTCCAATCGGATAAAACAAGTGAAAAATCTGACACAGAGGGTCTAGTAGCCATTGTGGTGAAACAAGCAGAAGCTACTGCTTCAAGCACATACACCTACATCTCGAAACAAATGCTTACAAACGGAACGATGTTCGGATCAGCTGGTGAGTTGTGCGAAAGCCACTACGAGACTACAAGGCTGACACTTCAAGAGTCGGCCAACGATTTGGGAAACGATAGCTTTGATTCTGCAGGACGCAAGGCAAGTGAAGCGAGAGAACAAGCTAAGACCTGTGGCAGTGATTTTGCAAGGTTCAGTGTCACTTATCCTCCAGACTTGGCTAAGAGGGAAACACTGCTTAAGCAATTGTGTGATATTGCTTCTAACATAATTTCTAGTCTTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

317

Amino Acids

35.03

Weight (kDa)

7.53

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	169 - 308	7.4e-19	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	137, 237
AclWI	GGATC	2 cut(s)	365, 703
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	247, 391, 565
AflII	CTTAAG	1 cut(s)	899
AgsI	TTSAA	5 cut(s)	182, 202, 284, 642, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	6 cut(s)	155, 221, 632, 701, 780, 824
AluI	AGCT	6 cut(s)	155, 221, 632, 701, 780, 824
Alw26I	GTCTC	4 cut(s)	6, 183, 330, 722
AlwI	GGATC	2 cut(s)	365, 703
AoxI	GGCC	5 cut(s)	238, 393, 438, 446, 756
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	394, 438
AsuHPI	GGTGA	3 cut(s)	100, 628, 716
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	270, 421, 429
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BcoDI	GTCTC	4 cut(s)	6, 183, 330, 722
BfaI	CTAG	4 cut(s)	17, 105, 602, 936
BfmI	CTRYAG	1 cut(s)	789
BfrI	CTTAAG	1 cut(s)	899
BisI	GCNGC	2 cut(s)	238, 309
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	239, 310
BmgT120I	GGNCC	2 cut(s)	394, 438
BmiI	GGNNCC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	3 cut(s)	76, 370, 855
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	2 cut(s)	6, 330
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 853, 883
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 391, 565
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	247, 391, 565
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	5 cut(s)	240, 395, 440, 448, 758
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	247, 391, 565
BsmAI	GTCTC	4 cut(s)	6, 183, 330, 722
BsnI	GGCC	5 cut(s)	240, 395, 440, 448, 758
Bso31I	GGTCTC	2 cut(s)	6, 330
Bsp143I	GATC	4 cut(s)	244, 357, 541, 695
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	2 cut(s)	137, 237
BspANI	GGCC	5 cut(s)	240, 395, 440, 448, 758
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	260
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	2 cut(s)	365, 703
BspTI	CTTAAG	1 cut(s)	899
BspTNI	GGTCTC	2 cut(s)	6, 330
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	244, 357, 541, 695
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	181
BstAFI	CTTAAG	1 cut(s)	899
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	45, 473, 825, 882
BstDSI	CCRYGG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	247, 360, 544, 698
BstMAI	GTCTC	4 cut(s)	6, 183, 330, 722
BstMBI	GATC	4 cut(s)	244, 357, 541, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 161, 809
BstNSI	RCATGY	2 cut(s)	346, 470
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	2 cut(s)	410, 766
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	5 cut(s)	240, 395, 440, 448, 758
BtgI	CCRYGG	1 cut(s)	385
BtsI	GCAGTG	3 cut(s)	56, 844, 893
BtsIMutI	CAGTG	5 cut(s)	56, 253, 844, 862, 893
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	394, 438
CseI	GACGC	1 cut(s)	804
CviAII	CATG	4 cut(s)	343, 386, 467, 524
DdeI	CTNAG	4 cut(s)	45, 473, 825, 882
DpnI	GATC	4 cut(s)	246, 359, 543, 697
DpnII	GATC	4 cut(s)	244, 357, 541, 695
DraI	TTTAAA	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	385
Eco31I	GGTCTC	2 cut(s)	6, 330
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	4 cut(s)	346, 389, 470, 527
FatI	CATG	4 cut(s)	342, 385, 466, 523
Fnu4HI	GCNGC	2 cut(s)	238, 309
Fsp4HI	GCNGC	2 cut(s)	238, 309
FspBI	CTAG	4 cut(s)	17, 105, 602, 936
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	238, 309
GsuI	CTGGAG	3 cut(s)	76, 370, 855
HaeIII	GGCC	5 cut(s)	240, 395, 440, 448, 758
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	804
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	346, 389, 470, 527
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	290, 752, 785
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	3 cut(s)	100, 628, 716
Hpy188I	TCNGA	4 cut(s)	117, 568, 589, 695
Hpy188III	TCNNGA	4 cut(s)	365, 661, 749, 872
Hpy99I	CGWCG	2 cut(s)	321, 341
HpyAV	CCTTC	4 cut(s)	176, 196, 362, 465
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	7 cut(s)	80, 422, 466, 527, 549, 791, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 161, 809
HpyF3I	CTNAG	4 cut(s)	45, 473, 825, 882
Hsp92II	CATG	4 cut(s)	346, 389, 470, 527
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	244, 357, 541, 695
LmnI	GCTCC	2 cut(s)	206, 264
LpnPI	CCDG	9 cut(s)	40, 233, 241, 334, 335, 687, 777, 844, 885
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	4 cut(s)	17, 105, 602, 936
MaeIII	GTNAC	2 cut(s)	251, 859
MalI	GATC	4 cut(s)	246, 359, 543, 697
MboI	GATC	4 cut(s)	244, 357, 541, 695
MboII	GAAGA	4 cut(s)	32, 198, 479, 526
MfeI	CAATTG	1 cut(s)	905
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	9 cut(s)	39, 61, 81, 231, 303, 331, 373, 905, 930
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	251, 569, 589, 879, 879
MseI	TTAA	6 cut(s)	27, 38, 98, 141, 302, 900
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	701
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	905
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	41, 161, 809
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	4 cut(s)	244, 357, 541, 695
NlaIII	CATG	4 cut(s)	346, 389, 470, 527
NlaIV	GGNNCC	1 cut(s)	260
NmuCI	GTSAC	2 cut(s)	251, 859
NspI	RCATGY	2 cut(s)	346, 470
PaeI	GCATGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	290, 785
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	239, 310
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	2 cut(s)	394, 438
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	6 cut(s)	27, 38, 98, 141, 302, 900
SatI	GCNGC	2 cut(s)	238, 309
Sau3AI	GATC	4 cut(s)	244, 357, 541, 695
Sau96I	GGNCC	2 cut(s)	394, 438
SchI	GAGTC	1 cut(s)	761
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	294, 899
SmoI	CTYRAG	2 cut(s)	294, 899
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	9 cut(s)	39, 61, 81, 231, 303, 331, 373, 905, 930
SsiI	CCGC	2 cut(s)	137, 237
SspMI	CTAG	4 cut(s)	17, 105, 602, 936
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	2 cut(s)	243, 662
TasI	AATT	9 cut(s)	39, 61, 81, 231, 303, 331, 373, 905, 930
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	290, 785
Tru1I	TTAA	6 cut(s)	27, 38, 98, 141, 302, 900
Tru9I	TTAA	6 cut(s)	27, 38, 98, 141, 302, 900
TscAI	CASTG	5 cut(s)	56, 260, 844, 862, 900
TseFI	GTSAC	2 cut(s)	251, 859
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	251, 859
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	5 cut(s)	56, 260, 844, 862, 900
Van91I	CCANNNNNTGG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	2 cut(s)	346, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	4 cut(s)	17, 105, 602, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.