Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

6135341 .. 6140678

Gene Structure 5338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTCGTCATTCACCATGGGAGGTTGCTCAAGGGATGGGGACACCTCTTCGATGCGGACCAGCGAGGCTTATCAAAAAAAAAGGGAAGTGGTCACCAATCGGTAAAGTCACGCTTTAGCAAAACCCGTGCTTTTCCGGACTTCTCGGTGATTGCTCGCTTAATCTACAACGTTAAGTATCGATTCGGTGAACGCAAAGAGATCACAACTAAAGCTCTTATCCGTAAGGCAAAAAGTCATTTTCCGAAAGGCAGAGAAAAGAGCCTTGTGACGAGGTTGGTGCTTTCCTCGTCCACAACGTTTGATCAAGAAGTCAGGTCACGGGACTCCCCGACGATCGCGCCCCACCGTGCCGGCACGTCGCGCACACGCTCAAAAGAGACAATTTGCAAGCCAACCGATTTTGGAGCCAAACATTTTGGTACGCCCGGTGGGACCGCACTAGAGTCTTTTTGTGTTCGCCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.57

Weight (kDa)

10.88

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	341, 364
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	56, 438
AclI	AACGTT	2 cut(s)	171, 299
AfaI	GTAC	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	360
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	343, 366
AspS9I	GGNCC	2 cut(s)	58, 435
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	5, 86, 160, 200
AvaII	GGWCC	2 cut(s)	58, 435
BccI	CCATC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	58, 435
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	2 cut(s)	58, 435
BmiI	GGNNCC	2 cut(s)	409, 436
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	341, 364
Bsh1285I	CGRYCG	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	137, 354, 429
BslFI	GGGAC	3 cut(s)	54, 338, 448
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	3 cut(s)	54, 338, 448
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	201, 304, 336
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	2 cut(s)	56, 438
BspDI	ATCGAT	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	341, 364
BspLI	GGNNCC	2 cut(s)	409, 436
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	3 cut(s)	201, 304, 336
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	157, 355, 392
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	2 cut(s)	341, 364
BstHHI	GCGC	2 cut(s)	343, 366
BstKTI	GATC	3 cut(s)	204, 307, 339
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	201, 304, 336
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	2 cut(s)	341, 364
Bsu15I	ATCGAT	1 cut(s)	181
BsuTUI	ATCGAT	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	157, 355, 392
CfoI	GCGC	2 cut(s)	343, 366
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	58, 435
ClaI	ATCGAT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	5 cut(s)	69, 215, 264, 394, 410
CviKI_1	RGCY	5 cut(s)	69, 215, 264, 394, 410
CviQI	GTAC	1 cut(s)	423
DpnI	GATC	3 cut(s)	203, 306, 338
DpnII	GATC	3 cut(s)	201, 304, 336
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	58, 435
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	20
FaiI	YATR	1 cut(s)	18
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	3 cut(s)	54, 338, 448
FatI	CATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	1 cut(s)	48
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	342, 365
HapII	CCGG	3 cut(s)	137, 354, 429
HhaI	GCGC	2 cut(s)	343, 366
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	341, 364
HinP1I	GCGC	2 cut(s)	341, 364
HinfI	GANTC	3 cut(s)	183, 326, 446
HpaII	CCGG	3 cut(s)	137, 354, 429
HphI	GGTGA	4 cut(s)	5, 86, 160, 200
Hpy166II	GTNNAC	2 cut(s)	191, 294
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	2 cut(s)	137, 308
Hpy8I	GTNNAC	2 cut(s)	191, 294
Hpy99I	CGWCG	2 cut(s)	337, 364
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	3 cut(s)	171, 299, 359
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpySE526I	ACGT	3 cut(s)	171, 299, 359
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	341, 364
Kpn2I	TCCGGA	1 cut(s)	136
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	201, 304, 336
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	5 cut(s)	74, 150, 301, 367, 442
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	3 cut(s)	171, 299, 359
MaeIII	GTNAC	4 cut(s)	92, 108, 268, 318
MalI	GATC	3 cut(s)	203, 306, 338
MboI	GATC	3 cut(s)	201, 304, 336
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	320, 455
MnlI	CCTC	5 cut(s)	15, 56, 59, 267, 298
MroI	TCCGGA	1 cut(s)	136
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	2 cut(s)	161, 174
MspI	CCGG	3 cut(s)	137, 354, 429
MspR9I	CCNGG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	341, 364
MwoI	GCNNNNNNNGC	1 cut(s)	363
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	201, 304, 336
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	409, 436
NmuCI	GTSAC	4 cut(s)	92, 108, 268, 318
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	183
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	2 cut(s)	320, 454
PpsI	GAGTC	2 cut(s)	320, 454
Psp1406I	AACGTT	2 cut(s)	171, 299
PspEI	GGTNACC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	409, 436
PspPI	GGNCC	2 cut(s)	58, 435
PvuI	CGATCG	1 cut(s)	339
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	161, 174
Sau3AI	GATC	3 cut(s)	201, 304, 336
Sau96I	GGNCC	2 cut(s)	58, 435
SchI	GAGTC	2 cut(s)	320, 455
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	8 cut(s)	26, 48, 174, 217, 278, 302, 320, 362
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	58, 435
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	2 cut(s)	56, 438
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	3 cut(s)	174, 302, 362
TaqI	TCGA	2 cut(s)	51, 181
TasI	AATT	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	161, 174
Tru9I	TTAA	2 cut(s)	161, 174
TseFI	GTSAC	4 cut(s)	92, 108, 268, 318
Tsp45I	GTSAC	4 cut(s)	92, 108, 268, 318
TspGWI	ACGGA	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	58, 435
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.