Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002281.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

152102 .. 152923

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002281.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ctgaggcaaggagcagtcgaaaccctaaggtataaatacagggctaagcggcgaaaccttcaacctctctctgatcaatcaatcccaacgattacaaagcctccccggagcaaaccttcaacctcgttgaaacccggtgacctcccgcccgtcctagtctcctcgcgagccgactgtcagcctcaccagatcaacccggcgaccgtgcttccagtcctagtctccccgcgagccgactgtcagtactactgccaccgatacaaccagcgaagcaagggtaacgccctcgcacccagcgaagctagagtcacgcttgagcagaacccatgcttatctcatcttcccacgcttgaagaagaagtcaggtcacgggactaccccaacgacagcaccccgcggtgctggcacgcctgcgcaaccatacgctcaaaagagactgacctacttaagcgagcccaagatgagtttggcttcaatcatctgatggggggtctcacgattccttgcagagaagagaccttccttgatcttattacttctgatctggcgaggtgtcaggtgatcatgaagaggatcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

193

Amino Acids

21.89

Weight (kDa)

9.2

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	415
AccII	CGCG	3 cut(s)	166, 229, 397
AciI	CCGC	5 cut(s)	49, 146, 227, 395, 397
AclWI	GGATC	1 cut(s)	581
AfaI	GTAC	1 cut(s)	245
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	62, 120, 130, 353, 475
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	5 cut(s)	163, 226, 428, 497, 509
AlwI	GGATC	1 cut(s)	581
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspLEI	GCGC	1 cut(s)	416
AsuC2I	CCSGG	3 cut(s)	106, 135, 197
AsuHPI	GGTGA	3 cut(s)	149, 176, 571
AxyI	CCTNAGG	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	457
BccI	CCATC	1 cut(s)	478
BclI	TGATCA	2 cut(s)	73, 561
BcnI	CCSGG	3 cut(s)	106, 135, 197
BcoDI	GTCTC	5 cut(s)	163, 226, 428, 497, 509
BfaI	CTAG	3 cut(s)	155, 218, 303
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	50
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	106, 135, 197
BmrFI	CCNGG	3 cut(s)	106, 135, 197
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	106, 135, 197
BsaI	GGTCTC	2 cut(s)	497, 509
BsaJI	CCNNGG	2 cut(s)	104, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bse1I	ACTGG	1 cut(s)	212
Bse21I	CCTNAGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	104, 395
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	3 cut(s)	166, 229, 397
Bsh1285I	CGRYCG	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	106, 135, 197
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	5 cut(s)	163, 226, 428, 497, 509
BsmFI	GGGAC	1 cut(s)	386
Bso31I	GGTCTC	2 cut(s)	497, 509
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	166
BspACI	CCGC	5 cut(s)	49, 146, 227, 395, 397
BspFNI	CGCG	3 cut(s)	166, 229, 397
BspHI	TCATGA	1 cut(s)	564
BspPI	GGATC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	2 cut(s)	497, 509
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	104, 395
BssMI	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
Bst4CI	ACNGT	3 cut(s)	176, 205, 239
Bst6I	CTCTTC	2 cut(s)	507, 563
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	6 cut(s)	168, 231, 404, 408, 412, 453
BstDEI	CTNAG	3 cut(s)	2, 26, 45
BstDSI	CCRYGG	1 cut(s)	395
BstEII	GGTNACC	1 cut(s)	137
BstFNI	CGCG	3 cut(s)	166, 229, 397
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	6 cut(s)	76, 192, 529, 544, 564, 576
BstMAI	GTCTC	5 cut(s)	163, 226, 428, 497, 509
BstMBI	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	104, 133, 195
BstUI	CGCG	3 cut(s)	166, 229, 397
Bsu36I	CCTNAGG	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	395
BtuMI	TCGCGA	1 cut(s)	166
Cac8I	GCNNGC	6 cut(s)	168, 231, 404, 408, 412, 453
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	416
Cfr42I	CCGCGG	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	327, 565
CviJI	RGCY	8 cut(s)	44, 100, 170, 181, 233, 302, 455, 471
CviKI_1	RGCY	8 cut(s)	44, 100, 170, 181, 233, 302, 455, 471
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	2, 26, 45
DpnI	GATC	6 cut(s)	75, 191, 528, 543, 563, 575
DpnII	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
Eam1104I	CTCTTC	2 cut(s)	507, 563
EarI	CTCTTC	2 cut(s)	507, 563
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	2 cut(s)	497, 509
Eco81I	CCTNAGG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	457
FaeI	CATG	2 cut(s)	330, 568
FaiI	YATR	4 cut(s)	33, 328, 422, 566
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	326, 564
FauI	CCCGC	3 cut(s)	153, 234, 402
FbaI	TGATCA	2 cut(s)	73, 561
Fnu4HI	GCNGC	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	3 cut(s)	155, 218, 303
FspI	TGCGCA	1 cut(s)	415
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	3 cut(s)	106, 135, 197
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	330, 568
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	2 cut(s)	306, 499
HpaII	CCGG	3 cut(s)	106, 135, 197
HphI	GGTGA	3 cut(s)	149, 176, 571
Hpy188I	TCNGA	3 cut(s)	73, 483, 541
Hpy188III	TCNNGA	3 cut(s)	165, 496, 565
HpyAV	CCTTC	3 cut(s)	68, 126, 529
HpyCH4III	ACNGT	3 cut(s)	176, 205, 239
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	3 cut(s)	2, 26, 45
Hsp92II	CATG	2 cut(s)	330, 568
HspAI	GCGC	1 cut(s)	414
Ksp22I	TGATCA	2 cut(s)	73, 561
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
LmnI	GCTCC	2 cut(s)	11, 108
MaeI	CTAG	3 cut(s)	155, 218, 303
MaeIII	GTNAC	4 cut(s)	137, 278, 307, 366
MalI	GATC	6 cut(s)	75, 191, 528, 543, 563, 575
MboI	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
MboII	GAAGA	5 cut(s)	332, 365, 368, 524, 580
MhlI	GDGCHC	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	75, 111, 133, 152, 172, 192, 296, 543, 564
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	3 cut(s)	106, 135, 197
MspR9I	CCNGG	3 cut(s)	106, 135, 197
MvnI	CGCG	3 cut(s)	166, 229, 397
MwoI	GCNNNNNNNGC	1 cut(s)	403
NciI	CCSGG	3 cut(s)	106, 135, 197
NdeII	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
NlaIII	CATG	2 cut(s)	330, 568
NmuCI	GTSAC	3 cut(s)	137, 307, 366
NruI	TCGCGA	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	415
PagI	TCATGA	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	166
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	6 cut(s)	73, 189, 526, 541, 561, 573
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	3 cut(s)	106, 135, 197
SduI	GDGCHC	1 cut(s)	457
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	314, 446
SmoI	CTYRAG	2 cut(s)	314, 446
SsiI	CCGC	5 cut(s)	49, 146, 227, 395, 397
SspMI	CTAG	3 cut(s)	155, 218, 303
StyD4I	CCNGG	3 cut(s)	104, 133, 195
TaaI	ACNGT	3 cut(s)	176, 205, 239
TaqI	TCGA	1 cut(s)	18
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	3 cut(s)	137, 307, 366
Tsp45I	GTSAC	3 cut(s)	137, 307, 366
TspDTI	ATGAA	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	3 cut(s)	155, 218, 303
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.