Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

13038348 .. 13039366

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGCATACCCTACCGCATTCAAGAGGAGGATTATATCCAGGACTCCCAAAGGCGAGAAAAGAACCCCGTGACGAGGTTGGTGCTCTCCTCGTCCACAGCGCTTGAAGAAGAAGTCAGGTCACGGGACTACCCCAACGACCGCACCCCGCGGTGCCGGCACGCCCGCGCAACCACAAGCTCAAAAGAGACTGTTTGCACACCAGCTGGTTTTGGAGCCAAACAGAGTATACTTGGGGATGATTATGTTCCGCCCTCAAATGTAAATCCAGATGTGTTGCCATTCAGTTGCCGATGGATTCTCTTAGTGCTAAATGAAGCCATATCCAAAACTATTATCTCATTGGAATCATACGAGTACTTGGTTGCAGCAACTGCTGCTTATGGTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGCTGTGATTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

145

Amino Acids

16.56

Weight (kDa)

5.18

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	2 cut(s)	151, 168
AciI	CCGC	6 cut(s)	16, 142, 149, 151, 166, 251
AfaI	GTAC	2 cut(s)	359, 398
AfeI	AGCGCT	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	23, 107
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	180, 206, 403
AluI	AGCT	3 cut(s)	180, 206, 403
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	374
Aor51HI	AGCGCT	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	368, 377
AspLEI	GCGC	2 cut(s)	103, 170
BanI	GGYRCC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	364, 380
BccI	CCATC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	2 cut(s)	369, 378
BlsI	GCNGC	2 cut(s)	370, 379
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	155, 217
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	41, 79
BseXI	GCAGC	2 cut(s)	364, 380
Bsh1236I	CGCG	2 cut(s)	151, 168
Bsh1285I	CGRYCG	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	6 cut(s)	16, 142, 149, 151, 166, 251
BspFNI	CGCG	2 cut(s)	151, 168
BspLI	GGNNCC	2 cut(s)	155, 217
BspT107I	GGYRCC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	149
BssNAI	GTATAC	1 cut(s)	230
Bst1107I	GTATAC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	193
BstAPI	GCANNNNNTGC	2 cut(s)	374, 377
BstC8I	GCNNGC	3 cut(s)	158, 162, 166
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	151, 168
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 170
BstMAI	GTCTC	1 cut(s)	182
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 374, 377, 400
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	2 cut(s)	151, 168
BstV1I	GCAGC	2 cut(s)	364, 380
BstV2I	GAAGAC	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	3 cut(s)	158, 162, 166
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	2 cut(s)	103, 170
Cfr10I	RCCGGY	1 cut(s)	156
Cfr42I	CCGCGG	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	358, 397
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviJI	RGCY	5 cut(s)	180, 206, 218, 320, 403
CviKI_1	RGCY	5 cut(s)	180, 206, 218, 320, 403
CviQI	GTAC	2 cut(s)	358, 397
DdeI	CTNAG	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	39
FaiI	YATR	7 cut(s)	8, 36, 230, 246, 323, 352, 384
FaqI	GGGAC	1 cut(s)	140
FauI	CCCGC	2 cut(s)	156, 173
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	369, 378
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	369, 378
GlaI	GCGC	2 cut(s)	102, 169
GluI	GCNGC	2 cut(s)	369, 378
HaeII	RGCGCY	1 cut(s)	104
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	2 cut(s)	103, 170
Hin6I	GCGC	2 cut(s)	101, 168
HinP1I	GCGC	2 cut(s)	101, 168
HinfI	GANTC	4 cut(s)	44, 298, 347, 427
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	96, 230
Hpy188III	TCNNGA	2 cut(s)	23, 269
Hpy8I	GTNNAC	2 cut(s)	96, 230
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	6, 198, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 374, 377, 400
HpyF3I	CTNAG	1 cut(s)	304
HspAI	GCGC	2 cut(s)	101, 168
KroI	GCCGGC	1 cut(s)	156
KroNI	GCCGGC	1 cut(s)	158
KspI	CCGCGG	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	8 cut(s)	26, 53, 103, 170, 192, 216, 282, 413
Lsp1109I	GCAGC	2 cut(s)	364, 380
MaeIII	GTNAC	2 cut(s)	70, 120
MboII	GAAGA	3 cut(s)	119, 122, 406
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	19, 22, 69, 100, 265
MroNI	GCCGGC	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	3 cut(s)	151, 206, 403
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	151, 168
MwoI	GCNNNNNNNGC	4 cut(s)	157, 374, 377, 400
NaeI	GCCGGC	1 cut(s)	158
NgoMIV	GCCGGC	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	155, 217
NmuCI	GTSAC	2 cut(s)	70, 120
PctI	GAATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	298, 347, 427
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	370, 379
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	155, 217
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	206, 403
RsaI	GTAC	2 cut(s)	359, 398
RsaNI	GTAC	2 cut(s)	358, 397
RseI	CAYNNNNRTG	1 cut(s)	422
SacII	CCGCGG	1 cut(s)	152
SatI	GCNGC	2 cut(s)	369, 378
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	5 cut(s)	80, 122, 182, 208, 405
Sfr303I	CCGCGG	1 cut(s)	152
SgrBI	CCGCGG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	422
SsiI	CCGC	6 cut(s)	16, 142, 149, 151, 166, 251
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	193
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	298, 347, 427
TseFI	GTSAC	2 cut(s)	70, 120
TseI	GCWGC	2 cut(s)	368, 377
Tsp45I	GTSAC	2 cut(s)	70, 120
TspDTI	ATGAA	2 cut(s)	330, 406
XmiI	GTMKAC	1 cut(s)	229
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.