Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

19260687 .. 19281008

Gene Structure 20322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGAGCGGCTTTTGTCTTCGTATTAACGGCTCACTAGCTCGGTCTCGAGGTCATTATCCTCATCCTCCTCCTCCTCCTCACTTGAAGCCGCCGCCATTGTTTACCCTCATCGCCTCCTTCGTCAACCTCCTCGGCTTCTTTGGTATCGACTTCGTCCAGTCCTTTATCTCACGCGCCTCCTACTACGATGACTCCGTTGCGTCATACTTTCTCGAATTGAAGCTCGGTGACCGCAAGAGAGCGGCGGAGATTCGGCGCAAGTGGCTTCTCATCAGAGTTGTACTCTATCGGTGGCTAGAGGATAGCTTGAGCTCGTGGAAACAAGTACCGGAAGATTTGTACCATCTGAAATTGGAATCGACAAGTCTTCTAGTGATTACATTTCTAGTGATGAACAAACCCCAAAACCAAAAAAGAGAAGATCCTCCTCTCCCCGAGGAGTTGCCTCATACTCCGAGCCCCAAAACCCCTAAAGCTCCAACACTAGCCCACCGCCTACATCGATCTCCCACCGACGCCCATCACAACTTCAACCCCTTCGCTTATCCCATTGATTCCCGCAGCTCCGACGACGACTTCTTCTCCTACACCGCCTCGATTCCAACCGTGACATCACCGCTTTGCCATCGATCTCTTCGACCTAAAGTTGCAAAGGCTTCTTTGGAAAAAGCATTGGCTAACAATGCTGACATAGAAAAGATATTCTTGTCTTCAACGCTGCCCATTGTAGCAGCCGAACTTCGATTTTGGACTCGAAATTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

256

Amino Acids

29.24

Weight (kDa)

9.49

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	9, 245
AccII	CGCG	1 cut(s)	177
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	760
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	3 cut(s)	285, 330, 344
AgsI	TTSAA	5 cut(s)	88, 223, 535, 717, 766
AluBI	AGCT	6 cut(s)	41, 226, 309, 315, 479, 567
AluI	AGCT	6 cut(s)	41, 226, 309, 315, 479, 567
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	2 cut(s)	48, 437
ApeKI	GCWGC	3 cut(s)	564, 721, 734
ApoI	RAATTY	1 cut(s)	760
ArsI	GACNNNNNNTTYG	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	179, 261
AsuHPI	GGTGA	2 cut(s)	242, 609
AvaI	CYCGRG	2 cut(s)	48, 437
BanII	GRGCYC	2 cut(s)	317, 464
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	3 cut(s)	11, 362, 705
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	576, 708, 746
BccI	CCATC	3 cut(s)	354, 531, 636
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	5 cut(s)	38, 299, 374, 389, 488
BisI	GCNGC	7 cut(s)	10, 92, 95, 246, 565, 722, 735
BlsI	GCNGC	7 cut(s)	11, 93, 96, 247, 566, 723, 736
BmeT110I	CYCGRG	2 cut(s)	48, 437
BpiI	GAAGAC	3 cut(s)	11, 362, 705
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpuEI	CTTGAG	1 cut(s)	331
Bsa29I	ATCGAT	2 cut(s)	505, 631
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	133, 438
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 569, 599
Bse1I	ACTGG	1 cut(s)	160
BseCI	ATCGAT	2 cut(s)	505, 631
BseDI	CCNNGG	2 cut(s)	133, 438
BseGI	GGATG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	7 cut(s)	60, 63, 66, 69, 122, 420, 455
BseXI	GCAGC	3 cut(s)	576, 708, 746
Bsh1236I	CGCG	1 cut(s)	177
BshVI	ATCGAT	2 cut(s)	505, 631
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	2 cut(s)	48, 437
BsiSI	CCGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	2 cut(s)	48, 437
Bsp1286I	GDGCHC	2 cut(s)	317, 464
Bsp143I	GATC	3 cut(s)	424, 506, 632
BspDI	ATCGAT	2 cut(s)	505, 631
BspFNI	CGCG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	51
BsrBI	CCGCTC	2 cut(s)	9, 245
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	133, 438
BssMI	GATC	3 cut(s)	424, 506, 632
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	642
BstACI	GRCGYC	1 cut(s)	519
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	179, 261
BstKTI	GATC	3 cut(s)	427, 509, 635
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	424, 506, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 686
BstPI	GGTNACC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	576, 708, 746
BstV2I	GAAGAC	3 cut(s)	11, 362, 705
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	2 cut(s)	505, 631
BsuTUI	ATCGAT	2 cut(s)	505, 631
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	64
CfoI	GCGC	2 cut(s)	179, 261
ClaI	ATCGAT	2 cut(s)	505, 631
CseI	GACGC	2 cut(s)	192, 527
Csp6I	GTAC	3 cut(s)	284, 329, 343
CviQI	GTAC	3 cut(s)	284, 329, 343
DpnI	GATC	3 cut(s)	426, 508, 634
DpnII	GATC	3 cut(s)	424, 506, 632
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	317, 464
Eco31I	GGTCTC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	315
Eco88I	CYCGRG	2 cut(s)	48, 437
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	315
EcoO65I	GGTNACC	1 cut(s)	230
EcoT38I	GRGCYC	2 cut(s)	317, 464
FaiI	YATR	3 cut(s)	208, 453, 695
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	7 cut(s)	10, 92, 95, 246, 565, 722, 735
FokI	GGATG	1 cut(s)	51
FriOI	GRGCYC	2 cut(s)	317, 464
Fsp4HI	GCNGC	7 cut(s)	10, 92, 95, 246, 565, 722, 735
FspBI	CTAG	5 cut(s)	38, 299, 374, 389, 488
GlaI	GCGC	2 cut(s)	178, 260
GluI	GCNGC	7 cut(s)	10, 92, 95, 246, 565, 722, 735
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	2 cut(s)	192, 527
HhaI	GCGC	2 cut(s)	179, 261
Hin1I	GRCGYC	1 cut(s)	519
Hin6I	GCGC	2 cut(s)	177, 259
HinP1I	GCGC	2 cut(s)	177, 259
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	6 cut(s)	194, 253, 359, 557, 601, 754
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	242, 609
Hpy166II	GTNNAC	2 cut(s)	105, 127
Hpy188I	TCNGA	4 cut(s)	278, 351, 459, 571
Hpy188III	TCNNGA	2 cut(s)	48, 215
Hpy8I	GTNNAC	2 cut(s)	105, 127
Hpy99I	CGWCG	3 cut(s)	521, 575, 578
HpyAV	CCTTC	2 cut(s)	130, 550
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 686
Hsp92I	GRCGYC	1 cut(s)	519
HspAI	GCGC	2 cut(s)	177, 259
Kzo9I	GATC	3 cut(s)	424, 506, 632
LmnI	GCTCC	2 cut(s)	484, 572
LpnPI	CCDG	2 cut(s)	173, 345
Lsp1109I	GCAGC	3 cut(s)	576, 708, 746
MaeI	CTAG	5 cut(s)	38, 299, 374, 389, 488
MaeIII	GTNAC	2 cut(s)	230, 610
MalI	GATC	3 cut(s)	426, 508, 634
MbiI	CCGCTC	2 cut(s)	9, 245
MboI	GATC	3 cut(s)	424, 506, 632
MboII	GAAGA	7 cut(s)	11, 347, 362, 434, 574, 629, 705
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	317, 464
MluCI	AATT	3 cut(s)	218, 353, 760
MlyI	GAGTC	2 cut(s)	188, 748
MmeI	TCCRAC	3 cut(s)	506, 594, 629
MseI	TTAA	1 cut(s)	27
MspI	CCGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	265, 686
NdeII	GATC	3 cut(s)	424, 506, 632
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	230, 610
PaeR7I	CTCGAG	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 195, 637
PfeI	GAWTC	4 cut(s)	253, 359, 557, 601
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	7 cut(s)	11, 93, 96, 247, 566, 723, 736
PleI	GAGTC	2 cut(s)	188, 748
PpsI	GAGTC	2 cut(s)	188, 748
Psp124BI	GAGCTC	1 cut(s)	317
PspEI	GGTNACC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	285, 330, 344
RsaNI	GTAC	3 cut(s)	284, 329, 343
SacI	GAGCTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	7 cut(s)	10, 92, 95, 246, 565, 722, 735
Sau3AI	GATC	3 cut(s)	424, 506, 632
SchI	GAGTC	2 cut(s)	188, 748
SduI	GDGCHC	2 cut(s)	317, 464
SetI	ASST	9 cut(s)	43, 55, 132, 228, 311, 317, 481, 569, 646
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	48, 310
SmoI	CTYRAG	2 cut(s)	48, 310
Sse9I	AATT	3 cut(s)	218, 353, 760
SspMI	CTAG	5 cut(s)	38, 299, 374, 389, 488
SstI	GAGCTC	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	610
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	218, 353, 760
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	4 cut(s)	12, 94, 97, 248
TfiI	GAWTC	4 cut(s)	253, 359, 557, 601
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	230, 610
TseI	GCWGC	3 cut(s)	564, 721, 734
Tsp45I	GTSAC	2 cut(s)	230, 610
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	760
XhoI	CTCGAG	1 cut(s)	48
XspI	CTAG	5 cut(s)	38, 299, 374, 389, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.