Rmu_sc0004538.1_g000008

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004538.1
OG0002038
Physical Location & Seq
Reverse (-)
15974 .. 17794
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004538.1_g000008.1.cds

Sequence Viewer

Length: 708 bp
atgtatctgacacacaaagtggtggcggctccggttttggattatgccactaacaatcggtggggtagtgaagaggtgttgagtagagggtttatgctgaaatggcttgctagcaactacagccggtgcgagcttagcggagggaagtgtggcttcgatttcaagacatctcgttttagcttcctagtctctcagagccgactgtcagtgctactgccaccgatactaccagcgaagcaagggcaaaagtgctttcccgaaaggctagaaaagaaccctgtgacgaggttggtgctctcctcgtccacagcgcttgaagaagaagtcaggtcaagggactaccccgacgactgcaccccactgtgctggcacgcttgcgcaatcacacgctcaaaagagacagtttgcacaccaactgcgaaaacccttaccaaaaggtttacgctaactactcaagacacaagacctccagttacagaccgcactctcgcgcggactgtagtggtctttctaaagaacaagcgactcagcgattttcgcacctcacctgttcgtccaacatgtcaactgaacaaggggagaatcatccggccgttactgagggccagagtgccaataccaatcaggtcagcgtaccccaccaccgtcactactacagtggggagtggagacggagaggctttcattccgaagcctattccagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

235

Amino Acids

26.36

Weight (kDa)

9.85

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 379
AccII CGCG 2 cut(s) 491, 493
AciI CCGC 4 cut(s) 26, 138, 481, 493
AcoI YGGCCR 1 cut(s) 590
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 635
AfeI AGCGCT 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 2 cut(s) 163, 317
AluBI AGCT 2 cut(s) 133, 180
AluI AGCT 2 cut(s) 133, 180
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 193, 392, 663
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 2 cut(s) 590, 603
AspLEI GCGC 3 cut(s) 313, 380, 493
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 537
AsuNHI GCTAGC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BcoDI GTCTC 3 cut(s) 193, 392, 663
BfaI CTAG 3 cut(s) 111, 185, 266
BfmI CTRYAG 3 cut(s) 118, 498, 654
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 585
BseMII CTCAG 3 cut(s) 206, 541, 590
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 289
BseX3I CGGCCG 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 337
Bsh1236I CGCG 2 cut(s) 491, 493
Bsh1285I CGRYCG 1 cut(s) 593
BshFI GGCC 2 cut(s) 592, 605
BsiEI CGRYCG 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 32, 124, 589
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 3 cut(s) 193, 392, 663
BsmBI CGTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 2 cut(s) 592, 605
Bsp1286I GDGCHC 1 cut(s) 297
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 4 cut(s) 26, 138, 481, 493
BspANI GGCC 2 cut(s) 592, 605
BspCNI CTCAG 3 cut(s) 205, 540, 591
BspFNI CGCG 2 cut(s) 491, 493
BspLI GGNNCC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 123
Bst4CI ACNGT 6 cut(s) 204, 363, 403, 499, 646, 658
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 6 cut(s) 108, 112, 131, 368, 372, 376
BstDEI CTNAG 4 cut(s) 134, 192, 527, 599
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 2 cut(s) 491, 493
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 3 cut(s) 313, 380, 493
BstMAI GTCTC 3 cut(s) 193, 392, 663
BstMCI CGRYCG 1 cut(s) 593
BstMWI GCNNNNNNNGC 4 cut(s) 103, 120, 135, 537
BstNSI RCATGY 1 cut(s) 564
BstSFI CTRYAG 3 cut(s) 118, 498, 654
BstUI CGCG 2 cut(s) 491, 493
BstXI CCANNNNNNTGG 1 cut(s) 366
BstZI CGGCCG 1 cut(s) 590
BsuRI GGCC 2 cut(s) 592, 605
BtsCI GGATG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 213, 359, 663
Cac8I GCNNGC 6 cut(s) 108, 112, 131, 368, 372, 376
CfoI GCGC 3 cut(s) 313, 380, 493
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 603
Csp6I GTAC 1 cut(s) 634
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 1 cut(s) 561
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 4 cut(s) 134, 192, 527, 599
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 590
EagI CGGCCG 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 590
Eco47III AGCGCT 1 cut(s) 312
Eco52I CGGCCG 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 663
FaeI CATG 1 cut(s) 564
FaiI YATR 3 cut(s) 45, 95, 562
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 350
FatI CATG 1 cut(s) 560
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 111, 185, 266
FspI TGCGCA 1 cut(s) 379
GlaI GCGC 3 cut(s) 312, 379, 492
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 2 cut(s) 592, 605
HapII CCGG 3 cut(s) 32, 124, 589
HhaI GCGC 3 cut(s) 313, 380, 493
Hin1II CATG 1 cut(s) 564
Hin6I GCGC 3 cut(s) 311, 378, 491
HinP1I GCGC 3 cut(s) 311, 378, 491
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HinfI GANTC 2 cut(s) 525, 582
HpaII CCGG 3 cut(s) 32, 124, 589
HphI GGTGA 1 cut(s) 537
Hpy166II GTNNAC 3 cut(s) 306, 441, 566
Hpy188I TCNGA 3 cut(s) 9, 195, 690
Hpy188III TCNNGA 4 cut(s) 163, 257, 455, 701
Hpy8I GTNNAC 3 cut(s) 306, 441, 566
Hpy99I CGWCG 1 cut(s) 350
HpyCH4III ACNGT 6 cut(s) 204, 363, 403, 499, 646, 658
HpyCH4V TGCA 2 cut(s) 354, 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 120, 135, 537
HpyF3I CTNAG 4 cut(s) 134, 192, 527, 599
Hsp92II CATG 1 cut(s) 564
HspAI GCGC 3 cut(s) 311, 378, 491
LmnI GCTCC 1 cut(s) 34
MaeI CTAG 3 cut(s) 111, 185, 266
MaeIII GTNAC 4 cut(s) 280, 472, 594, 646
MboII GAAGA 3 cut(s) 83, 329, 332
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 519
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 9 cut(s) 67, 80, 134, 279, 310, 477, 553, 594, 670
MspI CCGG 3 cut(s) 32, 124, 589
MvnI CGCG 2 cut(s) 491, 493
MwoI GCNNNNNNNGC 4 cut(s) 103, 120, 135, 537
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 564
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 280, 646
NsbI TGCGCA 1 cut(s) 379
NspI RCATGY 1 cut(s) 564
PciI ACATGT 1 cut(s) 560
PfeI GAWTC 1 cut(s) 582
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
PscI ACATGT 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 603
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 603
SchI GAGTC 1 cut(s) 519
SduI GDGCHC 1 cut(s) 297
SfcI CTRYAG 3 cut(s) 118, 498, 654
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SsiI CCGC 4 cut(s) 26, 138, 481, 493
SspMI CTAG 3 cut(s) 111, 185, 266
TaaI ACNGT 6 cut(s) 204, 363, 403, 499, 646, 658
TaqI TCGA 1 cut(s) 156
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 582
TscAI CASTG 3 cut(s) 213, 366, 663
TseFI GTSAC 2 cut(s) 280, 646
Tsp45I GTSAC 2 cut(s) 280, 646
TspDTI ATGAA 1 cut(s) 673
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 3 cut(s) 213, 366, 663
XceI RCATGY 1 cut(s) 564
XspI CTAG 3 cut(s) 111, 185, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.