Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 36, 73, 98 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AjnI | CCWGG | 1 cut(s) | 122 |
| AluBI | AGCT | 2 cut(s) | 90, 149 |
| AluI | AGCT | 2 cut(s) | 90, 149 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| AoxI | GGCC | 1 cut(s) | 99 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 46 |
| BccI | CCATC | 1 cut(s) | 123 |
| BciT130I | CCWGG | 1 cut(s) | 124 |
| BfaI | CTAG | 2 cut(s) | 77, 143 |
| BisI | GCNGC | 2 cut(s) | 74, 99 |
| BlsI | GCNGC | 2 cut(s) | 75, 100 |
| Bme1390I | CCNGG | 1 cut(s) | 124 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmrFI | CCNGG | 1 cut(s) | 124 |
| BmsI | GCATC | 1 cut(s) | 85 |
| BpiI | GAAGAC | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 1 cut(s) | 123 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseBI | CCWGG | 1 cut(s) | 124 |
| BseDI | CCNNGG | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 134 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 101 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| BspACI | CCGC | 3 cut(s) | 36, 73, 98 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BssECI | CCNNGG | 1 cut(s) | 123 |
| Bst2UI | CCWGG | 1 cut(s) | 124 |
| Bst4CI | ACNGT | 1 cut(s) | 173 |
| BstF5I | GGATG | 1 cut(s) | 134 |
| BstNI | CCWGG | 1 cut(s) | 124 |
| BstSCI | CCNGG | 1 cut(s) | 122 |
| BstV2I | GAAGAC | 1 cut(s) | 46 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 134 |
| BtsIMutI | CAGTG | 2 cut(s) | 17, 169 |
| CviJI | RGCY | 7 cut(s) | 76, 90, 101, 119, 139, 149, 177 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 90, 101, 119, 139, 149, 177 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| EcoRII | CCWGG | 1 cut(s) | 122 |
| FaiI | YATR | 2 cut(s) | 47, 63 |
| FauI | CCCGC | 1 cut(s) | 29 |
| Fnu4HI | GCNGC | 2 cut(s) | 74, 99 |
| FokI | GGATG | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 2 cut(s) | 74, 99 |
| FspBI | CTAG | 2 cut(s) | 77, 143 |
| GluI | GCNGC | 2 cut(s) | 74, 99 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| Hpy188III | TCNNGA | 2 cut(s) | 6, 152 |
| HpyCH4III | ACNGT | 1 cut(s) | 173 |
| LpnPI | CCDG | 2 cut(s) | 109, 136 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeI | CTAG | 2 cut(s) | 77, 143 |
| MaeIII | GTNAC | 1 cut(s) | 110 |
| MboII | GAAGA | 1 cut(s) | 46 |
| MluCI | AATT | 2 cut(s) | 30, 82 |
| MnlI | CCTC | 1 cut(s) | 130 |
| MseI | TTAA | 1 cut(s) | 66 |
| MspR9I | CCNGG | 1 cut(s) | 124 |
| MvaI | CCWGG | 1 cut(s) | 124 |
| NmuCI | GTSAC | 1 cut(s) | 110 |
| PkrI | GCNGC | 2 cut(s) | 75, 100 |
| Psp6I | CCWGG | 1 cut(s) | 122 |
| PspGI | CCWGG | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| SatI | GCNGC | 2 cut(s) | 74, 99 |
| ScrFI | CCNGG | 1 cut(s) | 124 |
| SetI | ASST | 3 cut(s) | 92, 112, 151 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| SgeI | CNNG | 9 cut(s) | 18, 49, 89, 135, 136, 147, 155, 162, 164 |
| Sse9I | AATT | 2 cut(s) | 30, 82 |
| SsiI | CCGC | 3 cut(s) | 36, 73, 98 |
| SspMI | CTAG | 2 cut(s) | 77, 143 |
| StyD4I | CCNGG | 1 cut(s) | 122 |
| TaaI | ACNGT | 1 cut(s) | 173 |
| TasI | AATT | 2 cut(s) | 30, 82 |
| TauI | GCSGC | 2 cut(s) | 76, 101 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| TscAI | CASTG | 2 cut(s) | 24, 176 |
| TseFI | GTSAC | 1 cut(s) | 110 |
| Tsp45I | GTSAC | 1 cut(s) | 110 |
| TspDTI | ATGAA | 1 cut(s) | 148 |
| TspRI | CASTG | 2 cut(s) | 24, 176 |
| XspI | CTAG | 2 cut(s) | 77, 143 |