Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001605.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

16929 .. 19470

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001605.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgcaaaagaaattcacaacaaattatcatccccttttgaatttcttgagcatctcaaggggtgtcacaaaggtgacaaggtcaaagctaggtatcaatgacctcaaaaaataccttgaaaaatttgtttacttgaactacaagaaacacaatctttctaaccacgatgacttcgacgacctcttggaggaagccatcaagaattaccggctcaaataccacctcaagccaacaggcaaattggatggaaaaacagtatcgaagatgatgatgcctcgttgtggtgtgccggacatcatcaatggcacttcggggatgcgtttaggcaagaaaagtcgtgtacccaatcctcctggagctatagcctatatcggtgatcatggagacggctacccagactggcgccaagggatcctggctcatgcttttgcgccttgctatggaagatttcattatgatgccgatgagttgtggttagttggagctgagcaaggttcttacgatttggagacggtggcgttgcatgagattggacaccttctgggacttgaccatagctcagttgagggagctatcatgcaaaagtcctttcccgaaaggctagagaagaatcttgtggcaaggttggtgctctcctcgtccacaacgcttgaagaagaagtcaggtcaagggactaccccaacgactgcaccccacggtgctggcacgcctgcgtaatcatacgctcaaaagagacgatttgcacaccaactggttttggagccaaacagatgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

259

Amino Acids

29.35

Weight (kDa)

8.89

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AclWI	GGATC	2 cut(s)	406, 419
AcsI	RAATTY	3 cut(s)	11, 40, 122
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	187, 281, 440
AgsI	TTSAA	4 cut(s)	40, 119, 136, 653
AjnI	CCWGG	2 cut(s)	352, 414
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	5 cut(s)	88, 359, 485, 558, 572
AluI	AGCT	5 cut(s)	88, 359, 485, 558, 572
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	3 cut(s)	378, 503, 728
AlwI	GGATC	2 cut(s)	406, 419
ApoI	RAATTY	3 cut(s)	11, 40, 122
AspLEI	GCGC	2 cut(s)	405, 433
AsuHPI	GGTGA	2 cut(s)	85, 386
BamHI	GGATCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	633
BccI	CCATC	2 cut(s)	203, 239
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	354, 416
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	378, 503, 728
BfaI	CTAG	2 cut(s)	89, 602
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	406
BlpI	GCTNAGC	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	354, 416
BmiI	GGNNCC	3 cut(s)	404, 413, 763
BmrFI	CCNGG	2 cut(s)	354, 416
BmsI	GCATC	4 cut(s)	60, 261, 306, 448
BpmI	CTGGAG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	3 cut(s)	40, 67, 209
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	406, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 281, 440
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	404, 757
BseBI	CCWGG	2 cut(s)	354, 416
BseDI	CCNNGG	2 cut(s)	406, 695
BseGI	GGATG	3 cut(s)	28, 250, 321
BseLI	CCNNNNNNNGG	3 cut(s)	187, 281, 440
BseMII	CTCAG	2 cut(s)	477, 573
BseNI	ACTGG	2 cut(s)	404, 757
BseRI	GAGGAG	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	208, 290
BslFI	GGGAC	2 cut(s)	558, 686
BslI	CCNNNNNNNGG	3 cut(s)	187, 281, 440
BsmAI	GTCTC	3 cut(s)	378, 503, 728
BsmBI	CGTCTC	3 cut(s)	378, 503, 728
BsmFI	GGGAC	2 cut(s)	558, 686
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	376, 411
Bsp1720I	GCTNAGC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	478, 572
BspLI	GGNNCC	3 cut(s)	404, 413, 763
BspPI	GGATC	2 cut(s)	406, 419
BspT107I	GGYRCC	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	404, 757
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	406, 695
BssMI	GATC	2 cut(s)	376, 411
BssNI	GRCGYC	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	354, 416
Bst4CI	ACNGT	3 cut(s)	256, 514, 699
BstACI	GRCGYC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	704, 708, 712
BstDEI	CTNAG	2 cut(s)	486, 559
BstDSI	CCRYGG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	28, 250, 321
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	405, 433
BstKTI	GATC	2 cut(s)	379, 414
BstMAI	GTCTC	3 cut(s)	378, 503, 728
BstMBI	GATC	2 cut(s)	376, 411
BstNI	CCWGG	2 cut(s)	354, 416
BstSCI	CCNGG	2 cut(s)	352, 414
BstSFI	CTRYAG	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	28, 250, 321
Cac8I	GCNNGC	3 cut(s)	704, 708, 712
CfoI	GCGC	2 cut(s)	405, 433
Cfr10I	RCCGGY	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	4 cut(s)	380, 422, 524, 577
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	486, 559
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	2 cut(s)	378, 413
DpnII	GATC	2 cut(s)	376, 411
Eco130I	CCWWGG	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	352, 414
EcoT14I	CCWWGG	1 cut(s)	406
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	3 cut(s)	378, 503, 728
FaeI	CATG	4 cut(s)	383, 425, 527, 580
FaqI	GGGAC	2 cut(s)	558, 686
FatI	CATG	4 cut(s)	379, 421, 523, 576
FbaI	TGATCA	1 cut(s)	376
FokI	GGATG	3 cut(s)	15, 257, 328
FspBI	CTAG	2 cut(s)	89, 602
GlaI	GCGC	2 cut(s)	404, 432
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	406
HapII	CCGG	2 cut(s)	208, 290
HhaI	GCGC	2 cut(s)	405, 433
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	4 cut(s)	383, 425, 527, 580
Hin6I	GCGC	2 cut(s)	403, 431
HinP1I	GCGC	2 cut(s)	403, 431
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	2 cut(s)	208, 290
HphI	GGTGA	2 cut(s)	85, 386
Hpy166II	GTNNAC	3 cut(s)	130, 341, 642
Hpy188III	TCNNGA	3 cut(s)	46, 199, 593
Hpy8I	GTNNAC	3 cut(s)	130, 341, 642
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	3 cut(s)	256, 514, 699
HpyCH4V	TGCA	5 cut(s)	4, 523, 580, 690, 744
HpyF3I	CTNAG	2 cut(s)	486, 559
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	383, 425, 527, 580
HspAI	GCGC	2 cut(s)	403, 431
KasI	GGCGCC	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	376, 411
LmnI	GCTCC	4 cut(s)	356, 482, 569, 761
LweI	GCATC	4 cut(s)	60, 261, 306, 448
MaeI	CTAG	2 cut(s)	89, 602
MaeIII	GTNAC	2 cut(s)	64, 73
MalI	GATC	2 cut(s)	378, 413
MboI	GATC	2 cut(s)	376, 411
MboII	GAAGA	5 cut(s)	274, 456, 619, 665, 668
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	6 cut(s)	11, 22, 40, 122, 202, 239
Mly113I	GGCGCC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	8 cut(s)	113, 181, 191, 233, 285, 360, 559, 646
MslI	CAYNNNNRTG	2 cut(s)	71, 456
MspI	CCGG	2 cut(s)	208, 290
MspR9I	CCNGG	2 cut(s)	354, 416
MvaI	CCWGG	2 cut(s)	354, 416
NarI	GGCGCC	1 cut(s)	403
NdeII	GATC	2 cut(s)	376, 411
NlaIII	CATG	4 cut(s)	383, 425, 527, 580
NlaIV	GGNNCC	3 cut(s)	404, 413, 763
NmuCI	GTSAC	2 cut(s)	64, 73
OliI	CACNNNNGTG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	610
PflFI	GACNNNGTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	352
PluTI	GGCGCC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	352, 414
PspGI	CCWGG	2 cut(s)	352, 414
PspN4I	GGNNCC	3 cut(s)	404, 413, 763
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	2 cut(s)	71, 456
Sau3AI	GATC	2 cut(s)	376, 411
ScrFI	CCNGG	2 cut(s)	354, 416
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	4 cut(s)	60, 261, 306, 448
SfcI	CTRYAG	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	71, 456
SmlI	CTYRAG	3 cut(s)	46, 55, 224
SmoI	CTYRAG	3 cut(s)	46, 55, 224
Sse9I	AATT	6 cut(s)	11, 22, 40, 122, 202, 239
SspDI	GGCGCC	1 cut(s)	402
SspMI	CTAG	2 cut(s)	89, 602
StyD4I	CCNGG	2 cut(s)	352, 414
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	256, 514, 699
TaqI	TCGA	2 cut(s)	174, 260
TasI	AATT	6 cut(s)	11, 22, 40, 122, 202, 239
TfiI	GAWTC	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	64, 73
Tsp45I	GTSAC	2 cut(s)	64, 73
TspDTI	ATGAA	1 cut(s)	440
Tth111I	GACNNNGTC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	3 cut(s)	11, 40, 122
XspI	CTAG	2 cut(s)	89, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.