Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010445.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

31603 .. 32190

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010445.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggatggggcattcgtggcacaaactggacgaagtggagctggggtcgtatttagggacactcatggccaagtccgagcagcagctgttcgaccattgcagtccaaagtaagattgcatagtcatggggagttcaaagtaacatttgctccacgtgaagctaatgtagtggctcataagttagcaaacaaagcatgtaatagtgatatccaaacatggtttggtactactccccaaatttataagggatgtcactctaaacgagtgtactcgttgattgatttaatagtcgagaccctaggtataaataccaggtttaaaggacaaagaaaggatatctctctcaaaaatcaatcaatcccagcgattacaaagcctccccggagtaaaccttcaacctcgttgaaacccggtgaccgcgcgccagtcctagtctctccaagagccgattgtcagcatcaccagatcaacccggcgaccgtacttccagtcctagtctctccaagtgctgactgccagtaccatttccaccgagactctctcaaccagcgaagcaaggataacgccctcgcaacccagcgaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

195

Amino Acids

21.44

Weight (kDa)

10.22

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccII	CGCG	2 cut(s)	420, 422
AciI	CCGC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	226, 269, 483, 521
AgsI	TTSAA	3 cut(s)	136, 396, 406
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	41, 86, 161, 585
AluI	AGCT	4 cut(s)	41, 86, 161, 585
Alw26I	GTCTC	4 cut(s)	287, 439, 502, 528
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	80, 83
ApoI	RAATTY	1 cut(s)	237
AspA2I	CCTAGG	1 cut(s)	298
AspLEI	GCGC	2 cut(s)	422, 424
AsuC2I	CCSGG	3 cut(s)	382, 411, 473
AsuHPI	GGTGA	2 cut(s)	425, 452
AvrII	CCTAGG	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	69
BbrPI	CACGTG	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	92, 95
BciT130I	CCWGG	1 cut(s)	313
BcnI	CCSGG	3 cut(s)	382, 411, 473
BcoDI	GTCTC	4 cut(s)	287, 439, 502, 528
BfaI	CTAG	3 cut(s)	299, 431, 494
BisI	GCNGC	2 cut(s)	81, 84
BlnI	CCTAGG	1 cut(s)	298
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	4 cut(s)	313, 382, 411, 473
BmrFI	CCNGG	4 cut(s)	313, 382, 411, 473
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BpuMI	CCSGG	3 cut(s)	382, 411, 473
BsaAI	YACGTR	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	298, 380
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 133, 163, 361, 391
Bse1I	ACTGG	4 cut(s)	31, 425, 488, 517
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	298, 380
BseGI	GGATG	2 cut(s)	10, 254
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	4 cut(s)	31, 425, 488, 517
BsePI	GCGCGC	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	92, 95
BseYI	CCCAGC	3 cut(s)	41, 361, 576
Bsh1236I	CGCG	2 cut(s)	420, 422
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	382, 411, 473
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	4 cut(s)	287, 439, 502, 528
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	420, 422
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	4 cut(s)	31, 425, 488, 517
BssECI	CCNNGG	2 cut(s)	298, 380
BssHII	GCGCGC	1 cut(s)	420
BssMI	GATC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	481
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	422
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	10, 254
BstFNI	CGCG	2 cut(s)	420, 422
BstHHI	GCGC	2 cut(s)	422, 424
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	4 cut(s)	287, 439, 502, 528
BstMBI	GATC	1 cut(s)	465
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 191
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	4 cut(s)	311, 380, 409, 471
BstUI	CGCG	2 cut(s)	420, 422
BstV1I	GCAGC	2 cut(s)	92, 95
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	10, 254
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	2 cut(s)	422, 424
CsiI	ACCWGGT	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	225, 268, 482, 520
CviAII	CATG	4 cut(s)	65, 125, 195, 216
CviJI	RGCY	8 cut(s)	41, 69, 86, 161, 173, 376, 446, 585
CviKI_1	RGCY	8 cut(s)	41, 69, 86, 161, 173, 376, 446, 585
CviQI	GTAC	4 cut(s)	225, 268, 482, 520
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	208, 337
Eco72I	CACGTG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	311
EcoRV	GATATC	2 cut(s)	208, 337
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	68, 128, 198, 219
FaiI	YATR	8 cut(s)	66, 120, 126, 177, 196, 217, 243, 305
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	64, 124, 194, 215
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	2 cut(s)	17, 261
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	3 cut(s)	299, 431, 494
GlaI	GCGC	2 cut(s)	421, 423
GluI	GCNGC	2 cut(s)	81, 84
GsaI	CCCAGC	3 cut(s)	45, 365, 580
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	3 cut(s)	382, 411, 473
HhaI	GCGC	2 cut(s)	422, 424
Hin1II	CATG	4 cut(s)	68, 128, 198, 219
Hin6I	GCGC	2 cut(s)	420, 422
HinP1I	GCGC	2 cut(s)	420, 422
HinfI	GANTC	1 cut(s)	536
HpaII	CCGG	3 cut(s)	382, 411, 473
HphI	GGTGA	2 cut(s)	425, 452
Hpy166II	GTNNAC	2 cut(s)	268, 389
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	268, 389
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	100, 118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 191
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	4 cut(s)	68, 128, 198, 219
HspAI	GCGC	2 cut(s)	420, 422
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	38, 154
Lsp1109I	GCAGC	2 cut(s)	92, 95
LweI	GCATC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	311
MaeI	CTAG	3 cut(s)	299, 431, 494
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	139, 251, 413
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	3 cut(s)	387, 409, 578
Mox20I	TGGCCA	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	284, 318
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	382, 411, 473
MspR9I	CCNGG	4 cut(s)	313, 382, 411, 473
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	313
MvnI	CGCG	2 cut(s)	420, 422
MwoI	GCNNNNNNNGC	2 cut(s)	17, 191
NciI	CCSGG	3 cut(s)	382, 411, 473
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	4 cut(s)	68, 128, 198, 219
NmuCI	GTSAC	2 cut(s)	251, 413
NspI	RCATGY	1 cut(s)	198
PauI	GCGCGC	1 cut(s)	420
PctI	GAATGC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	1 cut(s)	530
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	530
Ppu21I	YACGTR	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	311
PspCI	CACGTG	1 cut(s)	155
PspEI	GGTNACC	1 cut(s)	413
PspFI	CCCAGC	3 cut(s)	41, 361, 576
PspGI	CCWGG	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	86
PteI	GCGCGC	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	4 cut(s)	226, 269, 483, 521
RsaNI	GTAC	4 cut(s)	225, 268, 482, 520
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	284, 318
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	4 cut(s)	313, 382, 411, 473
SetI	ASST	9 cut(s)	43, 88, 157, 163, 304, 317, 394, 401, 587
SexAI	ACCWGGT	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	3 cut(s)	299, 431, 494
StyD4I	CCNGG	4 cut(s)	311, 380, 409, 471
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	91, 291
TasI	AATT	1 cut(s)	237
TatI	WGTACW	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	284, 318
Tru9I	TTAA	2 cut(s)	284, 318
TseFI	GTSAC	2 cut(s)	251, 413
TseI	GCWGC	2 cut(s)	80, 83
Tsp45I	GTSAC	2 cut(s)	251, 413
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	298
XspI	CTAG	3 cut(s)	299, 431, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.