Rh7DG178100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002038
Physical Location & Seq
Reverse (-)
16391948 .. 16392973
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG178100.1

Sequence Viewer

Length: 363 bp
ATGAGGTTGGTGCTCTCCTCGTCCACAACGCTTGATCAAGAAGTCAGGTCAAGGGACGCCCTGACGACTGCACCACACGATGCTGGCACGCTCGCGCATTCAAAAGAGACAGTTTGTACCGTACTGATTTCCGTGTCAAACAGGAGTCTTAAACTGTTCTGCTCCAAAAGCAACTGGCCTTCAAGAAGCAGAGCACTTCCTCTGTTTTCTGTCAAATCACAGTATTGTCCTAGATATGATTACTTGGGAAAGTTCAAAGCAAAGAAAATTGTACAACGAGTAAGAGAAATAGAGAAGGAGAAGCTACATGACTCTACATTCGTGAGGACTTGTGAGGTAAGCAGCAAGCAACAAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

9.57

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 3 cut(s) 118, 123, 273
AgsI TTSAA 3 cut(s) 102, 183, 256
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 15, 196
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 342
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 15, 196
BbvI GCAGC 1 cut(s) 354
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 231
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmsI GCATC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 15, 196
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 15, 196
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 178
BspFNI CGCG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 179
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 4 cut(s) 112, 121, 156, 222
BstACI GRCGYC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 4 cut(s) 85, 89, 93, 347
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 178
Cac8I GCNNGC 4 cut(s) 85, 89, 93, 347
CfoI GCGC 1 cut(s) 97
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 117, 122, 272
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 1 cut(s) 308
CviJI RGCY 2 cut(s) 178, 304
CviKI_1 RGCY 2 cut(s) 178, 304
CviQI GTAC 3 cut(s) 117, 122, 272
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
FaeI CATG 1 cut(s) 311
FaiI YATR 2 cut(s) 237, 309
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 343
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 2 cut(s) 145, 311
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 38, 183, 322
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 189, 289
HpyCH4III ACNGT 4 cut(s) 112, 121, 156, 222
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 5 cut(s) 31, 69, 74, 127, 160
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 231
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 15, 196
MluCI AATT 1 cut(s) 267
MlyI GAGTC 2 cut(s) 154, 305
MnlI CCTC 4 cut(s) 28, 210, 318, 328
MseI TTAA 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 97
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 311
PctI GAATGC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 2 cut(s) 153, 305
PpsI GAGTC 2 cut(s) 153, 305
RsaI GTAC 3 cut(s) 118, 123, 273
RsaNI GTAC 3 cut(s) 117, 122, 272
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 2 cut(s) 154, 305
SduI GDGCHC 2 cut(s) 15, 196
SetI ASST 4 cut(s) 8, 50, 306, 339
SfaNI GCATC 1 cut(s) 70
Sse9I AATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 4 cut(s) 112, 121, 156, 222
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 121
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.