Rh1BG033600

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
4616232 .. 4616714
483 bp
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UTR
Exon/CDS
Intron
Rh1BG033600.1

Sequence Viewer

Length: 483 bp
ATGATCCTAGAAGATTGTCCAGAGCTAGAATCATTTCCTATAGGGGGTTTGCCGTCAAAGTTAAAAACGCTTGAGTTTGATTGTAGCAAAAAGCTCTTGGAAAAGAAGCAATGGGGTCTACCAAGACTCAACTTTCTTAGAAGCTTAAAACTCAGCTTCAACGGATATGAAGGGACTTCATTTCCACTGGAGGTGGGACTGTTGCCAACTCAGCTCACTTCTCTCTATTTCTTCAATCTAAAGAATGTCACGACAATCAAAATCAAGGAGTTTCAAAACCTCAACTCTCTTGAAAAGCTGTTTATTGGGGAATGCCCCAAGTTGAGGAACTTACCTCCAGATGGGTTACCTGCTTCTCTTTATCATCTGGGAATCGAGAATTGTCCTTTGCTAAATGGAGGACAGAGGACAATGACACGGGAGAATTGCCCTGCGGTGATTGCTCGCATTCCTCTTGTAACAAATGATGGAAAAGAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.99

Weight (kDa)

8.26

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 118
AciI CCGC 1 cut(s) 434
AfiI CCNNNNNNNGG 3 cut(s) 44, 324, 341
AgsI TTSAA 4 cut(s) 160, 235, 275, 293
AluBI AGCT 6 cut(s) 25, 94, 144, 156, 214, 298
AluI AGCT 6 cut(s) 25, 94, 144, 156, 214, 298
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 448
BccI CCATC 2 cut(s) 335, 461
BceAI ACGGC 1 cut(s) 37
BfaI CTAG 2 cut(s) 8, 26
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 477
BpmI CTGGAG 2 cut(s) 209, 321
BpuEI CTTGAG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 324, 341
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 116
BseLI CCNNNNNNNGG 3 cut(s) 44, 324, 341
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 166, 224
BseNI ACTGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 187, 210
BslI CCNNNNNNNGG 3 cut(s) 44, 324, 341
BsmFI GGGAC 2 cut(s) 187, 210
BsmI GAATGC 2 cut(s) 317, 447
Bsp143I GATC 2 cut(s) 3, 477
BspACI CCGC 1 cut(s) 434
BspCNI CTCAG 2 cut(s) 165, 223
BspMI ACCTGC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 192
BssMI GATC 2 cut(s) 3, 477
Bst4CI ACNGT 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 3 cut(s) 137, 152, 210
BstEII GGTNACC 1 cut(s) 345
BstKTI GATC 2 cut(s) 6, 480
BstMBI GATC 2 cut(s) 3, 477
BstMWI GCNNNNNNNGC 2 cut(s) 211, 440
BstPI GGTNACC 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 445
CviJI RGCY 6 cut(s) 25, 94, 144, 156, 214, 298
CviKI_1 RGCY 6 cut(s) 25, 94, 144, 156, 214, 298
DdeI CTNAG 3 cut(s) 137, 152, 210
DpnI GATC 2 cut(s) 5, 479
DpnII GATC 2 cut(s) 3, 477
Eco91I GGTNACC 1 cut(s) 345
EcoO65I GGTNACC 1 cut(s) 345
FaiI YATR 2 cut(s) 41, 168
FaqI GGGAC 2 cut(s) 187, 210
FblI GTMKAC 1 cut(s) 118
FspBI CTAG 2 cut(s) 8, 26
GsuI CTGGAG 2 cut(s) 209, 321
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 3 cut(s) 29, 126, 372
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 5 cut(s) 20, 250, 290, 338, 376
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 440
HpyF3I CTNAG 3 cut(s) 137, 152, 210
Kzo9I GATC 2 cut(s) 3, 477
LpnPI CCDG 6 cut(s) 33, 173, 351, 353, 363, 444
MaeI CTAG 2 cut(s) 8, 26
MaeIII GTNAC 3 cut(s) 247, 345, 457
MalI GATC 2 cut(s) 5, 479
MboI GATC 2 cut(s) 3, 477
MboII GAAGA 2 cut(s) 23, 223
MflI RGATCY 1 cut(s) 477
MluCI AATT 2 cut(s) 379, 424
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 7 cut(s) 184, 290, 318, 345, 392, 399, 462
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 2 cut(s) 62, 146
Mva1269I GAATGC 2 cut(s) 317, 447
MwoI GCNNNNNNNGC 2 cut(s) 211, 440
NdeII GATC 2 cut(s) 3, 477
NmuCI GTSAC 1 cut(s) 247
PctI GAATGC 2 cut(s) 317, 447
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 29, 372
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 477
SaqAI TTAA 2 cut(s) 62, 146
Sau3AI GATC 2 cut(s) 3, 477
SchI GAGTC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 379, 424
SsiI CCGC 1 cut(s) 434
SspMI CTAG 2 cut(s) 8, 26
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 375
TasI AATT 2 cut(s) 379, 424
TfiI GAWTC 2 cut(s) 29, 372
Tru1I TTAA 2 cut(s) 62, 146
Tru9I TTAA 2 cut(s) 62, 146
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 168, 183
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 8, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.