Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

54215 .. 56783

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgtctaaaagttcggcggtagctgaaccttcgttaacgttgatccgatgggcggatcgatacttgcgatgttctcaaagcttccgctatctgtcaaataaaatacaaagggacgtcagagggagaccgcgttgggcagtcttcaactctccgatgcctaattcccagtttcagaagcttctgttgccatcttggcgcggcgcgtcggctgcgatctggaggtggtctgacgctgaggctgtagcccgcctagcgaaagtatgccatgccaccccatattatgatctttgtgtatctaccctccgatgcgataaaacaagcgaaaaatctgatacacaaggcctagtatcccttgtggtgaaacaagcagaagctaatgcattaagcacgttcacgttcatcttgaaccaactgcttacaaatggaatggtactcggatcagctggacgcaaggcaagtgatgctagagaacaagttaagatctgcggaagtgattttgcaaggttcagacgtgtcacttatcctccaaacttggcaaagagggaagcgctgctagagcaaccgtcgattacaaagcctccccggagcgaaccttcaaccccgttgaaacccggtgaccagccgccagtcctagtctcctctcgagccgactgtcagcctcaccagatcaacccggctaccgtacttccagtcccagtctccttacgagccgactggcagtactactgccaccgatacacccagcgaagcaaggcgcttgaagaagaagtcaggtcaagggactaccccaacgactgcaccccacggtgctggcacgcctgcacaaccacacgctcaaaagagactgtttgcacaccagctggttttggagccaaacattttggcacgcccagtgggacaacaatagtgtttctttgcgaacgcaaccattgggaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0008150 GO:0009628 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0080167 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

313

Amino Acids

35.21

Weight (kDa)

9.5

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccII	CGCG	3 cut(s)	130, 198, 203
AciI	CCGC	8 cut(s)	17, 53, 85, 128, 198, 247, 486, 623
AclI	AACGTT	1 cut(s)	38
AclWI	GGATC	3 cut(s)	37, 63, 445
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	432, 684, 722
AfeI	AGCGCT	1 cut(s)	549
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	5 cut(s)	145, 406, 597, 607, 761
AjiI	CACGTC	1 cut(s)	512
AluBI	AGCT	6 cut(s)	23, 81, 178, 374, 443, 860
AluI	AGCT	6 cut(s)	23, 81, 178, 374, 443, 860
Alw26I	GTCTC	4 cut(s)	118, 640, 703, 836
AlwI	GGATC	3 cut(s)	37, 63, 445
Ama87I	CYCGRG	1 cut(s)	642
Aor51HI	AGCGCT	1 cut(s)	549
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	209, 550
AspLEI	GCGC	4 cut(s)	198, 203, 550, 757
AsuC2I	CCSGG	3 cut(s)	583, 612, 674
AsuHPI	GGTGA	3 cut(s)	370, 626, 653
AvaI	CYCGRG	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	196, 537
BccI	CCATC	2 cut(s)	42, 196
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	3 cut(s)	583, 612, 674
BcoDI	GTCTC	4 cut(s)	118, 640, 703, 836
BfaI	CTAG	6 cut(s)	251, 344, 465, 554, 632, 940
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	2 cut(s)	551, 758
BfuI	GTATCC	1 cut(s)	358
BglI	GCCNNNNNGGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	4 cut(s)	199, 210, 551, 623
BlsI	GCNGC	4 cut(s)	200, 211, 552, 624
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	3 cut(s)	583, 612, 674
BmeT110I	CYCGRG	1 cut(s)	642
BmgBI	CACGTC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	871
BmrFI	CCNGG	3 cut(s)	583, 612, 674
BmrI	ACTGGG	3 cut(s)	160, 689, 885
BmsI	GCATC	3 cut(s)	144, 296, 451
BmuI	ACTGGG	3 cut(s)	160, 689, 885
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	3 cut(s)	583, 612, 674
Bsa29I	ATCGAT	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	581, 803
BsaXI	ACNNNNNCTCC	6 cut(s)	115, 145, 508, 538, 562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	6 cut(s)	166, 626, 689, 695, 719, 891
BseCI	ATCGAT	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	581, 803
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	6 cut(s)	166, 626, 689, 695, 719, 891
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	196, 537
BseYI	CCCAGC	1 cut(s)	741
BsgI	GTGCAG	2 cut(s)	781, 805
Bsh1236I	CGCG	3 cut(s)	130, 198, 203
BshFI	GGCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	3 cut(s)	583, 612, 674
BslFI	GGGAC	4 cut(s)	125, 677, 794, 910
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	4 cut(s)	118, 640, 703, 836
BsmFI	GGGAC	4 cut(s)	125, 677, 794, 910
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	642
Bsp143I	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
BspACI	CCGC	8 cut(s)	17, 53, 85, 128, 198, 247, 486, 623
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	58
BspFNI	CGCG	3 cut(s)	130, 198, 203
BspLI	GGNNCC	1 cut(s)	871
BspPI	GGATC	3 cut(s)	37, 63, 445
BspTNI	GGTCTC	1 cut(s)	118
BsrI	ACTGG	6 cut(s)	166, 626, 689, 695, 719, 891
BssECI	CCNNGG	2 cut(s)	581, 803
BssMI	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	5 cut(s)	564, 653, 682, 807, 847
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	5 cut(s)	247, 812, 816, 820, 887
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	803
BstEII	GGTNACC	1 cut(s)	614
BstFNI	CGCG	3 cut(s)	130, 198, 203
BstH2I	RGCGCY	2 cut(s)	551, 758
BstHHI	GCGC	4 cut(s)	198, 203, 550, 757
BstKTI	GATC	7 cut(s)	45, 58, 216, 286, 440, 483, 669
BstMAI	GTCTC	4 cut(s)	118, 640, 703, 836
BstMBI	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 193, 209, 251, 461, 556
BstPI	GGTNACC	1 cut(s)	614
BstSCI	CCNGG	3 cut(s)	581, 610, 672
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	3 cut(s)	130, 198, 203
BstV1I	GCAGC	2 cut(s)	196, 537
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	480
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	480
Bsu15I	ATCGAT	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	803
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	898
Cac8I	GCNNGC	5 cut(s)	247, 812, 816, 820, 887
CfoI	GCGC	4 cut(s)	198, 203, 550, 757
ClaI	ATCGAT	1 cut(s)	58
CseI	GACGC	3 cut(s)	192, 239, 456
Csp6I	GTAC	3 cut(s)	431, 683, 721
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	3 cut(s)	431, 683, 721
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	7 cut(s)	44, 57, 215, 285, 439, 482, 668
DpnII	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
EciI	GGCGGA	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	642
Eco91I	GGTNACC	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	1 cut(s)	269
FaiI	YATR	4 cut(s)	262, 267, 277, 282
FaqI	GGGAC	4 cut(s)	125, 677, 794, 910
FatI	CATG	1 cut(s)	265
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	4 cut(s)	199, 210, 551, 623
Fsp4HI	GCNGC	4 cut(s)	199, 210, 551, 623
FspBI	CTAG	6 cut(s)	251, 344, 465, 554, 632, 940
GlaI	GCGC	4 cut(s)	197, 202, 549, 756
GluI	GCNGC	4 cut(s)	199, 210, 551, 623
GsaI	CCCAGC	1 cut(s)	745
GsuI	CTGGAG	1 cut(s)	238
HaeII	RGCGCY	2 cut(s)	551, 758
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	3 cut(s)	583, 612, 674
HgaI	GACGC	3 cut(s)	192, 239, 456
HhaI	GCGC	4 cut(s)	198, 203, 550, 757
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	4 cut(s)	196, 201, 548, 755
HinP1I	GCGC	4 cut(s)	196, 201, 548, 755
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	2 cut(s)	79, 176
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	583, 612, 674
HphI	GGTGA	3 cut(s)	370, 626, 653
Hpy166II	GTNNAC	2 cut(s)	36, 393
Hpy188I	TCNGA	9 cut(s)	47, 119, 153, 174, 229, 305, 331, 437, 509
Hpy188III	TCNNGA	3 cut(s)	217, 403, 642
Hpy8I	GTNNAC	2 cut(s)	36, 393
Hpy99I	CGWCG	2 cut(s)	208, 568
HpyAV	CCTTC	2 cut(s)	39, 603
HpyCH4III	ACNGT	5 cut(s)	564, 653, 682, 807, 847
HpyCH4IV	ACGT	5 cut(s)	38, 114, 389, 395, 511
HpyCH4V	TGCA	5 cut(s)	380, 500, 798, 822, 852
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 193, 209, 251, 461, 556
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	5 cut(s)	38, 114, 389, 395, 511
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	4 cut(s)	196, 201, 548, 755
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
LmnI	GCTCC	2 cut(s)	585, 869
Lsp1109I	GCAGC	2 cut(s)	196, 537
LweI	GCATC	3 cut(s)	144, 296, 451
MaeI	CTAG	6 cut(s)	251, 344, 465, 554, 632, 940
MaeII	ACGT	5 cut(s)	38, 114, 389, 395, 511
MaeIII	GTNAC	2 cut(s)	514, 614
MalI	GATC	7 cut(s)	44, 57, 215, 285, 439, 482, 668
MboI	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
MboII	GAAGA	3 cut(s)	133, 773, 776
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	9 cut(s)	113, 213, 229, 311, 534, 534, 588, 649, 669
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	3 cut(s)	35, 383, 477
MspA1I	CMGCKG	2 cut(s)	443, 860
MspI	CCGG	3 cut(s)	583, 612, 674
MspR9I	CCNGG	3 cut(s)	583, 612, 674
MteI	GCGCNGCGC	1 cut(s)	199
MvnI	CGCG	3 cut(s)	130, 198, 203
MwoI	GCNNNNNNNGC	6 cut(s)	184, 193, 209, 251, 461, 556
NciI	CCSGG	3 cut(s)	583, 612, 674
NdeII	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	871
NmuCI	GTSAC	2 cut(s)	514, 614
NsiI	ATGCAT	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	200, 211, 552, 624
Psp1406I	AACGTT	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	2 cut(s)	443, 860
RsaI	GTAC	3 cut(s)	432, 684, 722
RsaNI	GTAC	3 cut(s)	431, 683, 721
SaqAI	TTAA	3 cut(s)	35, 383, 477
SatI	GCNGC	4 cut(s)	199, 210, 551, 623
Sau3AI	GATC	7 cut(s)	42, 55, 213, 283, 437, 480, 666
ScaI	AGTACT	1 cut(s)	722
ScrFI	CCNGG	3 cut(s)	583, 612, 674
SfaNI	GCATC	3 cut(s)	144, 296, 451
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	642
SlaI	CTCGAG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	8 cut(s)	17, 53, 85, 128, 198, 247, 486, 623
SspMI	CTAG	6 cut(s)	251, 344, 465, 554, 632, 940
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	581, 610, 672
TaaI	ACNGT	5 cut(s)	564, 653, 682, 807, 847
TaiI	ACGT	5 cut(s)	41, 117, 392, 398, 514
TaqI	TCGA	3 cut(s)	58, 566, 643
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	2 cut(s)	201, 625
Tru1I	TTAA	3 cut(s)	35, 383, 477
Tru9I	TTAA	3 cut(s)	35, 383, 477
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	2 cut(s)	514, 614
TseI	GCWGC	2 cut(s)	209, 550
Tsp45I	GTSAC	2 cut(s)	514, 614
TspDTI	ATGAA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	898
XhoI	CTCGAG	1 cut(s)	642
XspI	CTAG	6 cut(s)	251, 344, 465, 554, 632, 940
ZraI	GACGTC	1 cut(s)	115
ZrmI	AGTACT	1 cut(s)	722
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.