Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

31456880 .. 31469688

Gene Structure 12809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCACGCGTAAAGATACGGGAGTTATCTAAGGCACTTGTAAGCATGAACTTGAGCTTGAAAGAGTGCAATTCTTTTCCAAAAGGCATAGAAAAAAACTTGGTGGCGAGGTTGGTGCTCTCCTCATCAATAACATTTGAGAAGAAGTCGGGTCAAAGAGACGCTCGACGACTACACCGCAAGGTGTTGGCACGCTCGCGCACTCAAAAGAGACAGGTTGTGCAAGGGATTATTAGCGAGCTCGAATCGCAAGGGCGCTTCCCGGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGAATTGAAAGTTCGGTGCTTTATGAGTGTTGACGTGTACGCCGGACCAATACCTAATGAAAGTTCCAATGTGGTCAAAAAGCTGTTTGGATTTGGATCCTTTTTAAGTTTTTCAACGATTAAGCGGTGTGTGTATCGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

10.82

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	9, 199
AciI	CCGC	2 cut(s)	178, 433
AclWI	GGATC	2 cut(s)	399, 412
AfaI	GTAC	1 cut(s)	347
AflIII	ACRYGT	3 cut(s)	7, 295, 342
AgsI	TTSAA	3 cut(s)	61, 316, 423
AjiI	CACGTC	1 cut(s)	343
AluBI	AGCT	3 cut(s)	57, 241, 391
AluI	AGCT	3 cut(s)	57, 241, 391
Alw21I	GWGCWC	2 cut(s)	120, 243
Alw26I	GTCTC	2 cut(s)	153, 205
AlwI	GGATC	2 cut(s)	399, 412
Ama87I	CYCGRG	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	201, 258
AspS9I	GGNCC	2 cut(s)	304, 353
AsuC2I	CCSGG	2 cut(s)	263, 264
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	304, 353
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	120, 243
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BcnI	CCSGG	2 cut(s)	263, 264
BcoDI	GTCTC	2 cut(s)	153, 205
BfoI	RGCGCY	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	263, 264
Bme18I	GGWCC	2 cut(s)	304, 353
BmeT110I	CYCGRG	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	304, 353
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	263, 264
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	2 cut(s)	263, 264
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	9, 199
BsiHKAI	GWGCWC	2 cut(s)	120, 243
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	263, 351
BsmAI	GTCTC	2 cut(s)	153, 205
BsmBI	CGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	120, 243
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	2 cut(s)	178, 433
BspFNI	CGCG	2 cut(s)	9, 199
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	399, 412
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	193, 197, 239
BstDEI	CTNAG	1 cut(s)	30
BstFNI	CGCG	2 cut(s)	9, 199
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	201, 258
BstKTI	GATC	1 cut(s)	407
BstMAI	GTCTC	2 cut(s)	153, 205
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	261, 262
BstUI	CGCG	2 cut(s)	9, 199
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BtrI	CACGTC	1 cut(s)	343
Cac8I	GCNNGC	3 cut(s)	193, 197, 239
CfoI	GCGC	2 cut(s)	201, 258
Cfr13I	GGNCC	2 cut(s)	304, 353
Cfr9I	CCCGGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	46, 296
CviJI	RGCY	3 cut(s)	57, 241, 391
CviKI_1	RGCY	3 cut(s)	57, 241, 391
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	304, 353
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	2 cut(s)	49, 299
FaiI	YATR	4 cut(s)	47, 89, 297, 332
FatI	CATG	2 cut(s)	45, 295
FriOI	GRGCYC	1 cut(s)	243
GlaI	GCGC	2 cut(s)	200, 257
HaeII	RGCGCY	1 cut(s)	259
HapII	CCGG	2 cut(s)	263, 351
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	201, 258
Hin1II	CATG	2 cut(s)	49, 299
Hin6I	GCGC	2 cut(s)	199, 256
HinP1I	GCGC	2 cut(s)	199, 256
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	263, 351
Hpy166II	GTNNAC	3 cut(s)	304, 340, 346
Hpy8I	GTNNAC	3 cut(s)	304, 340, 346
Hpy99I	CGWCG	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	69, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	49, 299
HspAI	GCGC	2 cut(s)	199, 256
Kzo9I	GATC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	200, 276, 364
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	120, 243
MluCI	AATT	3 cut(s)	70, 270, 311
MluI	ACGCGT	1 cut(s)	7
MnlI	CCTC	3 cut(s)	102, 133, 269
MseI	TTAA	2 cut(s)	413, 429
MspI	CCGG	2 cut(s)	263, 351
MspR9I	CCNGG	2 cut(s)	263, 264
MvnI	CGCG	2 cut(s)	9, 199
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	2 cut(s)	263, 264
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	49, 299
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	2 cut(s)	304, 353
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	413, 429
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	2 cut(s)	304, 353
ScrFI	CCNGG	2 cut(s)	263, 264
SduI	GDGCHC	2 cut(s)	120, 243
SetI	ASST	8 cut(s)	59, 113, 186, 219, 243, 345, 364, 393
SinI	GGWCC	2 cut(s)	304, 353
SmaI	CCCGGG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	70, 270, 311
SsiI	CCGC	2 cut(s)	178, 433
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	261, 262
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	166, 243, 274
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	70, 270, 311
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	413, 429
Tru9I	TTAA	2 cut(s)	413, 429
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	62, 272, 381
TspMI	CCCGGG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	304, 353
XceI	RCATGY	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.