Rmu_ssc0000054.1_g000018

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000054.1
OG0002038
Physical Location & Seq
Forward (+)
101896 .. 104863
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000054.1_g000018.1.cds

Sequence Viewer

Length: 732 bp
atgcagaggaaactggacaggagggtgtgtaagacgaacaaagttactttgcgagagtcacacgagcgaaagtcctttcccgaaaggctagagaagaaccctgtggcgaggttagtgctctcctcgtccacagcgcttgaagaagaagtcaggtcaagggactaccctgacgactgcacctcgcggtgctggcacgcctgcgcaatcacacgctcaaaagagacagtttgcacaccgactggttttggagccaaacagcagctatttgttttatcagtatcttggctatcatactgttcgggtgtggctagagggcttctttatctccatcatggttcctgtttgaaggtaatacatagagatttgaaggtcagcaacattctgttggatgagaaaatgaacccaaaaatttcagatcttggattggcacttattgttcatgggacggatctagaaaatacacataaggcatggcacttgtggactgaaggcaagggactggactttgcagatgaagaactgaacaagggatattccttaacagaagtaatgtatgcattcatatcgggcttctttgtgtacaagatgatgctgcagataggccgaccatgcagtgagacagatgctccacaacctaagcagcctatatttgcttggaaaagttcagttccacagcttcaaaatagttactccacaagtgacactaccataacagtgattttaggacgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.57

Weight (kDa)

8.73

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 202
AccII CGCG 1 cut(s) 184
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 581
AfeI AGCGCT 1 cut(s) 135
AgsI TTSAA 4 cut(s) 140, 346, 367, 680
AluBI AGCT 2 cut(s) 262, 676
AluI AGCT 2 cut(s) 262, 676
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 215, 611
AlwI GGATC 1 cut(s) 456
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 3 cut(s) 259, 592, 640
ApoI RAATTY 1 cut(s) 408
AspLEI GCGC 2 cut(s) 136, 203
BauI CACGAG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 271, 579, 652
BccI CCATC 1 cut(s) 336
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 546, 580
BcoDI GTCTC 2 cut(s) 215, 611
BfaI CTAG 3 cut(s) 89, 309, 452
BfmI CTRYAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 137
BglII AGATCT 1 cut(s) 415
BisI GCNGC 3 cut(s) 260, 593, 641
BlsI GCNGC 3 cut(s) 261, 594, 642
BmiI GGNNCC 2 cut(s) 250, 337
BmsI GCATC 2 cut(s) 579, 613
Bpu10I CCTNAGC 1 cut(s) 636
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 610, 640
Bse1I ACTGG 3 cut(s) 18, 244, 504
BseGI GGATG 1 cut(s) 394
BseNI ACTGG 3 cut(s) 18, 244, 504
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 3 cut(s) 271, 579, 652
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 3 cut(s) 173, 457, 510
BsmAI GTCTC 2 cut(s) 215, 611
BsmFI GGGAC 3 cut(s) 173, 457, 510
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 2 cut(s) 415, 448
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 603
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 250, 337
BspMAI CTGCAG 1 cut(s) 597
BspPI GGATC 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 3 cut(s) 18, 244, 504
BssMI GATC 2 cut(s) 415, 448
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 226, 296, 715
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 191, 195, 199
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 203
BstKTI GATC 2 cut(s) 418, 451
BstMAI GTCTC 2 cut(s) 215, 611
BstMBI GATC 2 cut(s) 415, 448
BstMWI GCNNNNNNNGC 2 cut(s) 190, 609
BstSFI CTRYAG 1 cut(s) 593
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 271, 579, 652
BstX2I RGATCY 2 cut(s) 415, 448
BstYI RGATCY 2 cut(s) 415, 448
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 619, 720
Cac8I GCNNGC 3 cut(s) 191, 195, 199
CfoI GCGC 2 cut(s) 136, 203
Csp6I GTAC 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 332, 440, 471, 609
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 1 cut(s) 636
DpnI GATC 2 cut(s) 417, 450
DpnII GATC 2 cut(s) 415, 448
Eco47III AGCGCT 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 559
FaeI CATG 4 cut(s) 335, 443, 474, 612
FaqI GGGAC 3 cut(s) 173, 457, 510
FatI CATG 4 cut(s) 331, 439, 470, 608
Fnu4HI GCNGC 3 cut(s) 260, 593, 641
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 260, 593, 641
FspBI CTAG 3 cut(s) 89, 309, 452
FspI TGCGCA 1 cut(s) 202
GlaI GCGC 2 cut(s) 135, 202
GluI GCNGC 3 cut(s) 260, 593, 641
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 603
HhaI GCGC 2 cut(s) 136, 203
Hin1II CATG 4 cut(s) 335, 443, 474, 612
Hin6I GCGC 2 cut(s) 134, 201
HinP1I GCGC 2 cut(s) 134, 201
HinfI GANTC 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 129, 483, 580
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 2 cut(s) 80, 452
Hpy8I GTNNAC 3 cut(s) 129, 483, 580
HpyAV CCTTC 3 cut(s) 340, 361, 482
HpyCH4III ACNGT 3 cut(s) 226, 296, 715
HpyCH4V TGCA 7 cut(s) 4, 177, 231, 509, 557, 595, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 609
HpyF3I CTNAG 1 cut(s) 636
Hsp92II CATG 4 cut(s) 335, 443, 474, 612
HspAI GCGC 2 cut(s) 134, 201
Kzo9I GATC 2 cut(s) 415, 448
LmnI GCTCC 2 cut(s) 248, 631
LpnPI CCDG 9 cut(s) 4, 114, 136, 175, 180, 211, 225, 352, 485
Lsp1109I GCAGC 3 cut(s) 271, 579, 652
LweI GCATC 2 cut(s) 579, 613
MaeI CTAG 3 cut(s) 89, 309, 452
MaeIII GTNAC 4 cut(s) 43, 57, 686, 698
MalI GATC 2 cut(s) 417, 450
MboI GATC 2 cut(s) 415, 448
MboII GAAGA 4 cut(s) 106, 152, 155, 527
MflI RGATCY 2 cut(s) 415, 448
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 5 cut(s) 15, 102, 133, 190, 305
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 1 cut(s) 539
MslI CAYNNNNRTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 557
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 190, 609
NdeII GATC 2 cut(s) 415, 448
NlaIII CATG 4 cut(s) 335, 443, 474, 612
NlaIV GGNNCC 2 cut(s) 250, 337
NmuCI GTSAC 2 cut(s) 57, 698
NsbI TGCGCA 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 559
PctI GAATGC 1 cut(s) 557
PkrI GCNGC 3 cut(s) 261, 594, 642
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 250, 337
PstI CTGCAG 1 cut(s) 597
PsuI RGATCY 2 cut(s) 415, 448
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 713
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 3 cut(s) 260, 593, 641
Sau3AI GATC 2 cut(s) 415, 448
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 113, 155, 182, 264, 351, 372, 637, 678
SfaNI GCATC 2 cut(s) 579, 613
SfcI CTRYAG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 713
Sse9I AATT 1 cut(s) 408
SsiI CCGC 1 cut(s) 184
SspMI CTAG 3 cut(s) 89, 309, 452
TaaI ACNGT 3 cut(s) 226, 296, 715
TasI AATT 1 cut(s) 408
TatI WGTACW 1 cut(s) 579
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 2 cut(s) 619, 720
TseFI GTSAC 2 cut(s) 57, 698
TseI GCWGC 3 cut(s) 259, 592, 640
Tsp45I GTSAC 2 cut(s) 57, 698
TspDTI ATGAA 4 cut(s) 413, 428, 528, 550
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 619, 720
XapI RAATTY 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 451
XspI CTAG 3 cut(s) 89, 309, 452
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.