Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Reverse (-)

64584825 .. 64588091

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGATATTAACTAATCAAAGCATCGCTCTCCAATTAAGTCGGCCGGTGAAGCCGAAGCTAAAGTCACGCTTTAGCAAACCCCGTGCTTCTCCCAACTTCCCGGTGATTGCTCGCTTAGTCTACAACACTAAGTATCAATTTGGTGAACGCAAGAGATCACATCCAAAGTCCTTATCCATAAGGCAAGAAGTCCTTTCTCGGAAGGCTAGAGAAGAACCTTGTGGCGAGGTTGGTGCTCTCCTCGTCCACAACGCTTTGAAGAAGAAGTCGGTCGAGGGACTCCTCGACGACCGCACCCCAAGGTGCCGGCACGCTCGCGCAATCACACGCTCAAAAGAGACGGTTTGCGAGCCAACCGGTTTTGGAGCTAAACATTTTGGCACGCCCGGTGGGATGTCAATAGTGTCTTTTCATGACCATAGCCATTGGGAAGTCAAGCGAAAACCCTTACCAAAAGGTTTATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.6

Weight (kDa)

10.39

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	2 cut(s)	61, 371
AluI	AGCT	2 cut(s)	61, 371
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsiGI	ACCGGT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	323
AsuC2I	CCSGG	2 cut(s)	104, 390
AsuHPI	GGTGA	3 cut(s)	61, 118, 158
BanI	GGYRCC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcnI	CCSGG	2 cut(s)	104, 390
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	104, 390
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	104, 390
BmsI	GCATC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	104, 390
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	359
Bse118I	RCCGGY	3 cut(s)	46, 309, 359
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	163, 402
BseRI	GAGGAG	2 cut(s)	233, 275
BseX3I	CGGCCG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	3 cut(s)	47, 276, 295
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	306
BshTI	ACCGGT	1 cut(s)	359
BsiEI	CGRYCG	3 cut(s)	47, 276, 295
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	47, 104, 310, 360, 390
BslFI	GGGAC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	306
BsrFI	RCCGGY	3 cut(s)	46, 309, 359
BssAI	RCCGGY	3 cut(s)	46, 309, 359
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	6 cut(s)	115, 311, 315, 319, 353, 386
BstDEI	CTNAG	2 cut(s)	118, 132
BstF5I	GGATG	2 cut(s)	163, 402
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	3 cut(s)	47, 276, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	102, 388
BstUI	CGCG	1 cut(s)	321
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	163, 402
Cac8I	GCNNGC	6 cut(s)	115, 311, 315, 319, 353, 386
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	3 cut(s)	46, 309, 359
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	7 cut(s)	46, 55, 61, 209, 355, 371, 426
CviKI_1	RGCY	7 cut(s)	46, 55, 61, 209, 355, 371, 426
DdeI	CTNAG	2 cut(s)	118, 132
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	302
Eco52I	CGGCCG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	1 cut(s)	419
FaiI	YATR	4 cut(s)	182, 417, 423, 466
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 180, 212
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	123
FokI	GGATG	2 cut(s)	150, 409
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	5 cut(s)	47, 104, 310, 360, 390
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	5 cut(s)	47, 104, 310, 360, 390
HphI	GGTGA	3 cut(s)	61, 118, 158
Hpy166II	GTNNAC	3 cut(s)	124, 149, 250
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	3 cut(s)	124, 149, 250
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	118, 132
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	5 cut(s)	60, 117, 323, 373, 403
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	3 cut(s)	227, 274, 277
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	2 cut(s)	35, 140
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	4 cut(s)	223, 254, 271, 296
MroNI	GCCGGC	1 cut(s)	309
MseI	TTAA	2 cut(s)	11, 38
MspI	CCGG	5 cut(s)	47, 104, 310, 360, 390
MspR9I	CCNGG	2 cut(s)	104, 390
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	52
NaeI	GCCGGC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	104, 390
NdeII	GATC	1 cut(s)	158
NgoMIV	GCCGGC	1 cut(s)	309
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	66
PagI	TCATGA	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	359
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	11, 38
Sau3AI	GATC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	104, 390
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	6 cut(s)	63, 223, 234, 308, 373, 463
SfaNI	GCATC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	35, 140
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	102, 388
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	276, 288
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	35, 140
Tru1I	TTAA	2 cut(s)	11, 38
Tru9I	TTAA	2 cut(s)	11, 38
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.