Rmu_sc0010674.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010674.1
OG0002038
Physical Location & Seq
Forward (+)
25720 .. 29877
4158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010674.1_g000009.1.cds

Sequence Viewer

Length: 1071 bp
atggcatcgtttcaagcgatcgacacgtctttccaagtccccttcaatcagttacgtcccagcgggcctgatttcgcggcctggggggcaatggttaagcggcagaatcaaggagctctctctgatcaatcaatcccagcgattacaaagcctccccggagcaaaccttcaacctcgttgaaacccggtgaccgcccgccagtcctagtctcctcgcgagcccactgtcagcctcaccagatcaacccggcgaccgtacttccagtcccagtctcctcgcgagccgactgccagtactactgccaccgatacacccagcaaagcaaggcgcttaaagaagaagtcaggtcaagggactaccccaacgactgcaccccgcggtgctggcacgcctgcgcaatcacacgctcaaaagagactgtttgcacaccagctggttttggagccaaacagaacggctttaagaaattatgggattccttctatgcgtctgttcaatggttggtgggagatggtagtagaatttctttttgttcagacaattggttgggtactccaatctcatccatgcatcgaatcacgccaatggtgcggtcccttatgcctgtcaaggtcagtgatttcattagggacaagcaatgggcaatttcttctacctttaattttttcttcccagaccttgcttcaagaatttctaaagtggtgttgcctctggagaatggggtggaccaggttatttggccacataatgctgctggggttttaacttcaaaggaagcttttgattttatttcaccccctaagccgaaggtaaactggtgcaagttgatttggaataaagctttgcaaccacgaaaaagcttggtggcttggaaggttttaaataagcagattttaacagatgattggttagtaagaaggggaatctatctttgctctcagtgttctatctgccggtctcaatggggatggggggtgggttcccagagtgtggcagacccttctccttcgggattgagggtgggacttgttccctacattatctgcctccgaggaactaatatcgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

356

Amino Acids

39.75

Weight (kDa)

9.63

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 991
AccII CGCG 4 cut(s) 77, 217, 280, 379
AciI CCGC 8 cut(s) 63, 77, 100, 193, 197, 377, 379, 592
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 2 cut(s) 522, 690
AfaI GTAC 3 cut(s) 258, 296, 553
AfiI CCNNNNNNNGG 1 cut(s) 991
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 7 cut(s) 14, 46, 171, 181, 497, 687, 771
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 2 cut(s) 80, 729
AluBI AGCT 5 cut(s) 116, 434, 779, 842, 861
AluI AGCT 5 cut(s) 116, 434, 779, 842, 861
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 214, 277, 410, 963
AoxI GGCC 3 cut(s) 65, 78, 740
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 522, 690
AspLEI GCGC 2 cut(s) 331, 398
AspS9I GGNCC 3 cut(s) 65, 594, 727
AsuC2I CCSGG 3 cut(s) 157, 186, 248
AsuHPI GGTGA 3 cut(s) 200, 227, 786
AvaII GGWCC 2 cut(s) 594, 727
BalI TGGCCA 1 cut(s) 742
BanII GRGCYC 2 cut(s) 118, 223
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 739
BccI CCATC 2 cut(s) 506, 963
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 2 cut(s) 82, 731
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 3 cut(s) 157, 186, 248
BcoDI GTCTC 4 cut(s) 214, 277, 410, 963
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 3 cut(s) 78, 101, 753
BlsI GCNGC 3 cut(s) 79, 102, 754
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 5 cut(s) 82, 157, 186, 248, 731
Bme18I GGWCC 2 cut(s) 594, 727
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 65, 594, 727
BmiI GGNNCC 3 cut(s) 445, 596, 982
BmrFI CCNGG 5 cut(s) 82, 157, 186, 248, 731
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 14, 580
BmuI ACTGGG 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 734
Bpu10I CCTNAGC 1 cut(s) 801
BpuMI CCSGG 3 cut(s) 157, 186, 248
BsaI GGTCTC 1 cut(s) 963
BsaJI CCNNGG 4 cut(s) 81, 155, 377, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 991
Bse118I RCCGGY 1 cut(s) 954
Bse1I ACTGG 5 cut(s) 200, 263, 269, 292, 821
Bse3DI GCAATG 2 cut(s) 96, 644
BseBI CCWGG 2 cut(s) 82, 731
BseDI CCNNGG 4 cut(s) 81, 155, 377, 1051
BseGI GGATG 2 cut(s) 563, 974
BseLI CCNNNNNNNGG 1 cut(s) 991
BseMI GCAATG 2 cut(s) 96, 644
BseMII CTCAG 1 cut(s) 953
BseNI ACTGG 5 cut(s) 200, 263, 269, 292, 821
BseRI GAGGAG 2 cut(s) 202, 265
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 4 cut(s) 59, 136, 315, 755
BsgI GTGCAG 1 cut(s) 355
Bsh1236I CGCG 4 cut(s) 77, 217, 280, 379
Bsh1285I CGRYCG 2 cut(s) 21, 255
BshFI GGCC 3 cut(s) 67, 80, 742
BsiEI CGRYCG 2 cut(s) 21, 255
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 4 cut(s) 157, 186, 248, 955
BslFI GGGAC 7 cut(s) 23, 42, 251, 368, 580, 644, 1038
BslI CCNNNNNNNGG 1 cut(s) 991
BsmAI GTCTC 4 cut(s) 214, 277, 410, 963
BsmFI GGGAC 7 cut(s) 23, 42, 251, 368, 580, 644, 1038
BsnI GGCC 3 cut(s) 67, 80, 742
Bso31I GGTCTC 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 118, 223
Bsp143I GATC 3 cut(s) 18, 124, 240
Bsp68I TCGCGA 2 cut(s) 217, 280
BspACI CCGC 8 cut(s) 63, 77, 100, 193, 197, 377, 379, 592
BspANI GGCC 3 cut(s) 67, 80, 742
BspCNI CTCAG 1 cut(s) 952
BspFNI CGCG 4 cut(s) 77, 217, 280, 379
BspLI GGNNCC 3 cut(s) 445, 596, 982
BspTNI GGTCTC 1 cut(s) 963
BsrDI GCAATG 2 cut(s) 96, 644
BsrFI RCCGGY 1 cut(s) 954
BsrI ACTGG 5 cut(s) 200, 263, 269, 292, 821
BssAI RCCGGY 1 cut(s) 954
BssECI CCNNGG 4 cut(s) 81, 155, 377, 1051
BssMI GATC 3 cut(s) 18, 124, 240
Bst2UI CCWGG 2 cut(s) 82, 731
Bst4CI ACNGT 3 cut(s) 227, 256, 421
BstC8I GCNNGC 7 cut(s) 65, 197, 219, 282, 386, 390, 394
BstDEI CTNAG 2 cut(s) 801, 939
BstDSI CCRYGG 1 cut(s) 377
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 2 cut(s) 563, 974
BstFNI CGCG 4 cut(s) 77, 217, 280, 379
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 331, 398
BstKTI GATC 3 cut(s) 21, 127, 243
BstMAI GTCTC 4 cut(s) 214, 277, 410, 963
BstMBI GATC 3 cut(s) 18, 124, 240
BstMCI CGRYCG 2 cut(s) 21, 255
BstMWI GCNNNNNNNGC 3 cut(s) 86, 385, 589
BstNI CCWGG 2 cut(s) 82, 731
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 5 cut(s) 80, 155, 184, 246, 729
BstUI CGCG 4 cut(s) 77, 217, 280, 379
BstV1I GCAGC 1 cut(s) 739
BsuRI GGCC 3 cut(s) 67, 80, 742
BtgI CCRYGG 1 cut(s) 377
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 563, 974
BtsIMutI CAGTG 3 cut(s) 223, 622, 947
BtuMI TCGCGA 2 cut(s) 217, 280
Cac8I GCNNGC 7 cut(s) 65, 197, 219, 282, 386, 390, 394
CfoI GCGC 2 cut(s) 331, 398
Cfr10I RCCGGY 1 cut(s) 954
Cfr13I GGNCC 3 cut(s) 65, 594, 727
Cfr42I CCGCGG 1 cut(s) 380
CseI GACGC 1 cut(s) 477
CsiI ACCWGGT 1 cut(s) 729
Csp6I GTAC 3 cut(s) 257, 295, 552
CviAII CATG 1 cut(s) 568
CviQI GTAC 3 cut(s) 257, 295, 552
DdeI CTNAG 2 cut(s) 801, 939
DpnI GATC 3 cut(s) 20, 126, 242
DpnII GATC 3 cut(s) 18, 124, 240
DraI TTTAAA 1 cut(s) 882
EaeI YGGCCR 1 cut(s) 740
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 118, 223
Eco31I GGTCTC 1 cut(s) 963
Eco47I GGWCC 2 cut(s) 594, 727
Eco53kI GAGCTC 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 80, 729
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 2 cut(s) 118, 223
FaeI CATG 1 cut(s) 571
FaiI YATR 5 cut(s) 472, 486, 569, 602, 747
FaqI GGGAC 7 cut(s) 23, 42, 251, 368, 580, 644, 1038
FatI CATG 1 cut(s) 567
FauI CCCGC 3 cut(s) 56, 204, 384
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 78, 101, 753
FokI GGATG 2 cut(s) 550, 981
FriOI GRGCYC 2 cut(s) 118, 223
Fsp4HI GCNGC 3 cut(s) 78, 101, 753
FspBI CTAG 1 cut(s) 206
FspI TGCGCA 1 cut(s) 397
GlaI GCGC 2 cut(s) 330, 397
GluI GCNGC 3 cut(s) 78, 101, 753
GsaI CCCAGC 4 cut(s) 63, 140, 319, 759
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 3 cut(s) 67, 80, 742
HapII CCGG 4 cut(s) 157, 186, 248, 955
HgaI GACGC 1 cut(s) 477
HhaI GCGC 2 cut(s) 331, 398
Hin1II CATG 1 cut(s) 571
Hin6I GCGC 2 cut(s) 329, 396
HinP1I GCGC 2 cut(s) 329, 396
HindIII AAGCTT 3 cut(s) 777, 840, 859
HinfI GANTC 4 cut(s) 106, 476, 576, 924
HpaII CCGG 4 cut(s) 157, 186, 248, 955
HphI GGTGA 3 cut(s) 200, 227, 786
Hpy166II GTNNAC 2 cut(s) 727, 814
Hpy188I TCNGA 3 cut(s) 124, 538, 1052
Hpy188III TCNNGA 5 cut(s) 216, 279, 687, 713, 1011
Hpy8I GTNNAC 2 cut(s) 727, 814
HpyAV CCTTC 8 cut(s) 52, 177, 490, 802, 868, 912, 1011, 1017
HpyCH4III ACNGT 3 cut(s) 227, 256, 421
HpyCH4IV ACGT 2 cut(s) 26, 55
HpyCH4V TGCA 5 cut(s) 372, 426, 571, 822, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 385, 589
HpyF3I CTNAG 2 cut(s) 801, 939
HpySE526I ACGT 2 cut(s) 26, 55
Hsp92II CATG 1 cut(s) 571
HspAI GCGC 2 cut(s) 329, 396
Ksp22I TGATCA 1 cut(s) 124
KspI CCGCGG 1 cut(s) 380
Kzo9I GATC 3 cut(s) 18, 124, 240
LmnI GCTCC 3 cut(s) 113, 159, 443
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 2 cut(s) 14, 580
MabI ACCWGGT 1 cut(s) 729
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 26, 55
MaeIII GTNAC 2 cut(s) 51, 188
MalI GATC 3 cut(s) 20, 126, 242
MboI GATC 3 cut(s) 18, 124, 240
MboII GAAGA 3 cut(s) 350, 642, 661
MfeI CAATTG 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 118, 223
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 6 cut(s) 467, 522, 541, 645, 661, 690
MluNI TGGCCA 1 cut(s) 742
MnlI CCTC 9 cut(s) 162, 184, 223, 243, 286, 720, 1011, 1046, 1058
Mox20I TGGCCA 1 cut(s) 742
Mph1103I ATGCAT 1 cut(s) 573
MscI TGGCCA 1 cut(s) 742
MseI TTAA 7 cut(s) 96, 333, 462, 660, 764, 881, 896
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 742
MspA1I CMGCKG 3 cut(s) 63, 379, 434
MspI CCGG 4 cut(s) 157, 186, 248, 955
MspR9I CCNGG 5 cut(s) 82, 157, 186, 248, 731
MunI CAATTG 1 cut(s) 541
MvaI CCWGG 2 cut(s) 82, 731
MvnI CGCG 4 cut(s) 77, 217, 280, 379
MwoI GCNNNNNNNGC 3 cut(s) 86, 385, 589
NciI CCSGG 3 cut(s) 157, 186, 248
NdeII GATC 3 cut(s) 18, 124, 240
NlaIII CATG 1 cut(s) 571
NlaIV GGNNCC 3 cut(s) 445, 596, 982
NmuCI GTSAC 1 cut(s) 188
NruI TCGCGA 2 cut(s) 217, 280
NsbI TGCGCA 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 4 cut(s) 106, 476, 576, 924
PflMI CCANNNNNTGG 1 cut(s) 991
PkrI GCNGC 3 cut(s) 79, 102, 754
Ple19I CGATCG 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 80, 729
PspEI GGTNACC 1 cut(s) 188
PspFI CCCAGC 4 cut(s) 59, 136, 315, 755
PspGI CCWGG 2 cut(s) 80, 729
PspN4I GGNNCC 3 cut(s) 445, 596, 982
PspPI GGNCC 3 cut(s) 65, 594, 727
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 434
RruI TCGCGA 2 cut(s) 217, 280
RsaI GTAC 3 cut(s) 258, 296, 553
RsaNI GTAC 3 cut(s) 257, 295, 552
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 380
SaqAI TTAA 7 cut(s) 96, 333, 462, 660, 764, 881, 896
SatI GCNGC 3 cut(s) 78, 101, 753
Sau3AI GATC 3 cut(s) 18, 124, 240
Sau96I GGNCC 3 cut(s) 65, 594, 727
ScaI AGTACT 1 cut(s) 296
ScrFI CCNGG 5 cut(s) 82, 157, 186, 248, 731
SduI GDGCHC 2 cut(s) 118, 223
SexAI ACCWGGT 1 cut(s) 729
SfaNI GCATC 2 cut(s) 14, 580
Sfr303I CCGCGG 1 cut(s) 380
SgrBI CCGCGG 1 cut(s) 380
SinI GGWCC 2 cut(s) 594, 727
SmiMI CAYNNNNRTG 1 cut(s) 584
Sse9I AATT 6 cut(s) 467, 522, 541, 645, 661, 690
SsiI CCGC 8 cut(s) 63, 77, 100, 193, 197, 377, 379, 592
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 5 cut(s) 80, 155, 184, 246, 729
TaaI ACNGT 3 cut(s) 227, 256, 421
TaiI ACGT 2 cut(s) 29, 58
TaqI TCGA 2 cut(s) 21, 574
TasI AATT 6 cut(s) 467, 522, 541, 645, 661, 690
TatI WGTACW 1 cut(s) 294
TauI GCSGC 2 cut(s) 80, 103
TfiI GAWTC 4 cut(s) 106, 476, 576, 924
Tru1I TTAA 7 cut(s) 96, 333, 462, 660, 764, 881, 896
Tru9I TTAA 7 cut(s) 96, 333, 462, 660, 764, 881, 896
TscAI CASTG 3 cut(s) 230, 622, 947
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 613
TspRI CASTG 3 cut(s) 230, 622, 947
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 594, 727
XapI RAATTY 2 cut(s) 522, 690
XspI CTAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.