Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002038

Physical Location & Seq

Genomic Coordinates Forward (+)

6504449 .. 6505991

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATGGTTGGAGTACGTCCACAAACACTGGCAACTACAACGATTGGGATGCAACAATTGCAGCTGCTTCTCTAAAAGTACGTAGCAGCAACTGGTCAGGGGTTCAAACTGGCCTAGTTGGTGACTCAATTGGACATGCAAACATCCAGGAAATCTCTCCTACCCAAACAACTTCTACCTCTGATTCAATTATATCATCTTCAACCCAATCAGCTGCAATCCCATCAGCTTCACCACCGACTATTAGTGCTACGCCACCGATACTACCAGCGAAGCAATGGTATCGCCCTCGCAACCCAGCGAAGCTAAAGTCACGCTTTAGCAAACCCGTGCTTTCTCACAACTTCCTAGTGATTGCTCGCTTCGTCTACAACACTAAGTATCGATTCGGTGAACTCGAAGATACCACAACCAAAGCCCTTACCCGTATAAGGCAAAGAAGTCATTTTACGGAAGGCAAGGAAAAGAGCCATGTGATGAAGTTGGTGCTCTCCTCGTCCACAGCTCTTGATTCGAGAAGTCGGGTCAAGGGACGCCCCGACGACGCACCCCATGGTGGCGACACGCTGCGCACACTCTCGACAGAGACGGTTTGCAAGCCAACTGGTTTTGGAGCCACACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

208

Amino Acids

22.56

Weight (kDa)

10.0

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002038)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14700
pyrus_communis	pycom17g02020
rosa_chinensis	RchiOBHm_Chr3g0457301
rosa_laevigata	RLG00000011732 RLG00000013316 RLG00000023211
rosa_multiflora	Rmu_sc0000435.1_g000066 Rmu_sc0000469.1_g000012 Rmu_sc0001174.1_g000016 Rmu_sc0001522.1_g000016 Rmu_sc0001605.1_g000006 Rmu_sc0002281.1_g000040 Rmu_sc0003961.1_g000001 Rmu_sc0004538.1_g000008 Rmu_sc0004849.1_g000022 Rmu_sc0006059.1_g000058 Rmu_sc0006244.1_g000015 Rmu_sc0006388.1_g000024 Rmu_sc0007199.1_g000007 Rmu_sc0009454.1_g000015 Rmu_sc0010445.1_g000010 Rmu_sc0010674.1_g000009 Rmu_sc0012734.1_g000004 Rmu_sc0016141.1_g000003 Rmu_ssc0000054.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013820 Rroxscaffold_1G00019140 Rroxscaffold_2G00143180 Rroxscaffold_3G00228590 Rroxscaffold_3G00231450 Rroxscaffold_3G00272460 Rroxscaffold_4G00284560 Rroxscaffold_5G00338350 Rroxscaffold_5G00353580 Rroxscaffold_5G00357860 Rroxscaffold_5G00358350 Rroxscaffold_6G00397580 Rroxscaffold_6G00410760 Rroxscaffold_7G00170980
rosa_samantha	Rh1BG033600 Rh5AG320100 Rh6AG217600 Rh7DG178100
rosa_wichuraiana	Rw1G018200 Rw6G018990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	2 cut(s)	16, 81
AfiI	CCNNNNNNNGG	2 cut(s)	432, 557
AgsI	TTSAA	3 cut(s)	107, 189, 204
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	65, 215, 230, 307, 506
AluI	AGCT	5 cut(s)	65, 215, 230, 307, 506
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	5 cut(s)	62, 65, 87, 215, 568
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	134, 225, 404
BarI	GAAGNNNNNNTAC	2 cut(s)	433, 465
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	52, 74, 99, 202, 555
BccI	CCATC	1 cut(s)	232
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 266, 300
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	2 cut(s)	116, 350
BisI	GCNGC	5 cut(s)	63, 66, 88, 216, 569
BlsI	GCNGC	5 cut(s)	64, 67, 89, 217, 570
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 557
Bse1I	ACTGG	4 cut(s)	34, 98, 115, 610
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	2 cut(s)	55, 144
BseLI	CCNNNNNNNGG	2 cut(s)	432, 557
BseMI	GCAATG	1 cut(s)	284
BseNI	ACTGG	4 cut(s)	34, 98, 115, 610
BseRI	GAGGAG	1 cut(s)	484
BseXI	GCAGC	5 cut(s)	52, 74, 99, 202, 555
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	432, 557
BsmAI	GTCTC	1 cut(s)	581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp19I	CCATGG	1 cut(s)	553
BspANI	GGCC	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	4 cut(s)	34, 98, 115, 610
BssECI	CCNNGG	1 cut(s)	553
BssNI	GRCGYC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	592
BstACI	GRCGYC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	361, 599
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	2 cut(s)	55, 144
BstHHI	GCGC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	581
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	147
BstSNI	TACGTA	1 cut(s)	83
BstV1I	GCAGC	5 cut(s)	52, 74, 99, 202, 555
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	55, 144
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	361, 599
CaiI	CAGNNNCTG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	385
CseI	GACGC	2 cut(s)	543, 554
Csp6I	GTAC	2 cut(s)	15, 80
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	137, 473, 554
CviQI	GTAC	2 cut(s)	15, 80
DdeI	CTNAG	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	3 cut(s)	140, 476, 557
FaiI	YATR	5 cut(s)	138, 194, 431, 474, 555
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	3 cut(s)	136, 472, 553
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	5 cut(s)	63, 66, 88, 216, 569
FokI	GGATG	2 cut(s)	62, 131
Fsp4HI	GCNGC	5 cut(s)	63, 66, 88, 216, 569
FspBI	CTAG	2 cut(s)	116, 350
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	5 cut(s)	63, 66, 88, 216, 569
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	2 cut(s)	543, 554
HhaI	GCGC	1 cut(s)	573
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	3 cut(s)	140, 476, 557
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	4 cut(s)	125, 185, 387, 512
HphI	GGTGA	3 cut(s)	134, 225, 404
Hpy166II	GTNNAC	4 cut(s)	21, 370, 395, 501
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	509, 516, 580
Hpy8I	GTNNAC	4 cut(s)	21, 370, 395, 501
Hpy99I	CGWCG	2 cut(s)	545, 548
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	2 cut(s)	17, 82
HpyCH4V	TGCA	5 cut(s)	53, 62, 140, 218, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	17, 82
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	3 cut(s)	140, 476, 557
HspAI	GCGC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	614
LpnPI	CCDG	9 cut(s)	15, 79, 84, 96, 134, 161, 282, 312, 591
Lsp1109I	GCAGC	5 cut(s)	52, 74, 99, 202, 555
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	116, 350
MaeII	ACGT	2 cut(s)	17, 82
MaeIII	GTNAC	2 cut(s)	122, 312
MboII	GAAGA	2 cut(s)	192, 413
MfeI	CAATTG	2 cut(s)	57, 129
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	57, 129, 189
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	190, 300, 505
MseI	TTAA	1 cut(s)	625
MspA1I	CMGCKG	2 cut(s)	65, 215
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	2 cut(s)	57, 129
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	553
NlaIII	CATG	3 cut(s)	140, 476, 557
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	122, 312
NsbI	TGCGCA	1 cut(s)	572
NspI	RCATGY	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	185, 387, 512
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	64, 67, 89, 217, 570
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	93
PvuII	CAGCTG	2 cut(s)	65, 215
RsaI	GTAC	2 cut(s)	16, 81
RsaNI	GTAC	2 cut(s)	15, 80
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	5 cut(s)	63, 66, 88, 216, 569
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	8 cut(s)	20, 67, 85, 182, 217, 232, 309, 508
SfaNI	GCATC	1 cut(s)	40
SnaBI	TACGTA	1 cut(s)	83
Sse9I	AATT	3 cut(s)	57, 129, 189
SspMI	CTAG	2 cut(s)	116, 350
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	2 cut(s)	20, 85
TaqI	TCGA	4 cut(s)	385, 399, 515, 581
TasI	AATT	3 cut(s)	57, 129, 189
TfiI	GAWTC	3 cut(s)	185, 387, 512
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	122, 312
TseI	GCWGC	5 cut(s)	62, 65, 87, 215, 568
Tsp45I	GTSAC	2 cut(s)	122, 312
TspDTI	ATGAA	2 cut(s)	17, 494
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	34
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	116, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.