Rw1G018200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002038
Physical Location & Seq
Forward (+)
39971473 .. 39972134
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018200.1

Sequence Viewer

Length: 420 bp
ATGAGGTTAGTGCTCTCCTCGTCTACAACGCTTGAAGAAGAAGTCAAGTCAAGGGACTACCCCGACGACTGCACCCCAAGGTGCTGGCACGCCTGCGCAATCACACGCTCAAAAGAGACTGTTTGCACACCAACTGGTTTTGGAGCCAAACATTTTGGCACGCCCAGTGGGACAAAGCTAGCTAGAGTCTTTTGTGTTCATCATCATTGGGATGCCAGGGGAAAATCTTTACCAAAGGAGATTCCTAAAGTGAAAAGATGGCCAATGTTTCCACCAATGGCGACAGTACGACAAGTGAGGCTTTCGTTGCGAAGCCTATTCCAGAAGGAGCGACCTTCGAGGAAAGGTGCGCCATTATCATGGAAAATATCGAGAACCATCGCAAGAAGATGGACGCTAATTTTGCCAGGGAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.91

Weight (kDa)

10.63

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 97
AccI GTMKAC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 260
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 2 cut(s) 215, 406
AluBI AGCT 2 cut(s) 178, 182
AluI AGCT 2 cut(s) 178, 182
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AspLEI GCGC 2 cut(s) 98, 352
AsuNHI GCTAGC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 3 cut(s) 252, 384, 386
BciT130I CCWGG 2 cut(s) 217, 408
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 179, 183
Bme1390I CCNGG 2 cut(s) 217, 408
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 217, 408
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 202
BmtI GCTAGC 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 77, 216, 407
Bse1I ACTGG 2 cut(s) 139, 165
BseBI CCWGG 2 cut(s) 217, 408
BseDI CCNNGG 3 cut(s) 77, 216, 407
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 139, 165
BseRI GAGGAG 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 15
BslFI GGGAC 2 cut(s) 68, 184
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 68, 184
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 15
BspANI GGCC 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 139, 165
BssECI CCNNGG 3 cut(s) 77, 216, 407
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 217, 408
Bst4CI ACNGT 3 cut(s) 121, 286, 417
BstC8I GCNNGC 5 cut(s) 86, 90, 94, 161, 180
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 2 cut(s) 98, 352
BstMAI GTCTC 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 307, 403
BstNI CCWGG 2 cut(s) 217, 408
BstSCI CCNGG 2 cut(s) 215, 406
BstXI CCANNNNNNTGG 2 cut(s) 84, 360
BsuRI GGCC 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 5 cut(s) 86, 90, 94, 161, 180
CfoI GCGC 2 cut(s) 98, 352
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 360
CviJI RGCY 6 cut(s) 146, 178, 182, 262, 301, 315
CviKI_1 RGCY 6 cut(s) 146, 178, 182, 262, 301, 315
CviQI GTAC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 215, 406
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 1 cut(s) 363
FaiI YATR 1 cut(s) 361
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 68, 184
FatI CATG 1 cut(s) 359
FblI GTMKAC 1 cut(s) 23
FokI GGATG 1 cut(s) 224
FspBI CTAG 2 cut(s) 179, 183
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 2 cut(s) 97, 351
HaeIII GGCC 1 cut(s) 262
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 98, 352
Hin1II CATG 1 cut(s) 363
Hin6I GCGC 2 cut(s) 96, 350
HinP1I GCGC 2 cut(s) 96, 350
HinfI GANTC 2 cut(s) 186, 241
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 322, 372
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 319, 345
HpyCH4III ACNGT 3 cut(s) 121, 286, 417
HpyCH4V TGCA 2 cut(s) 72, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 403
Hsp92II CATG 1 cut(s) 363
HspAI GCGC 2 cut(s) 96, 350
LmnI GCTCC 2 cut(s) 143, 328
LpnPI CCDG 8 cut(s) 70, 106, 120, 178, 202, 229, 335, 393
LweI GCATC 1 cut(s) 202
MaeI CTAG 2 cut(s) 179, 183
MboII GAAGA 3 cut(s) 47, 50, 399
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 1 cut(s) 399
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 3 cut(s) 28, 291, 333
Mox20I TGGCCA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 262
MslI CAYNNNNRTG 2 cut(s) 210, 358
Msp20I TGGCCA 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 217, 408
MvaI CCWGG 2 cut(s) 217, 408
MwoI GCNNNNNNNGC 2 cut(s) 307, 403
NheI GCTAGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 97
PfeI GAWTC 1 cut(s) 241
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 215, 406
PspGI CCWGG 2 cut(s) 215, 406
PspN4I GGNNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 2 cut(s) 210, 358
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 217, 408
SduI GDGCHC 1 cut(s) 15
SetI ASST 6 cut(s) 8, 83, 180, 184, 337, 349
SfaNI GCATC 1 cut(s) 202
SmiMI CAYNNNNRTG 2 cut(s) 210, 358
Sse9I AATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 179, 183
StyD4I CCNGG 2 cut(s) 215, 406
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 121, 286, 417
TaqI TCGA 2 cut(s) 338, 371
TasI AATT 1 cut(s) 399
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 2 cut(s) 179, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.