Rw6G018990

cell wall vacuolar inhibitor of fructosidase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
37819112 .. 37819651
540 bp
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UTR
Exon/CDS
Intron
Rw6G018990.1

Sequence Viewer

Length: 486 bp
ATGGGTTCTACTACAGTTCTGTCACTCCTTTTGCCCTTGTCCATCTGTTTCCTCTTCAATCAATTATCCATTGTAGCAGCTGAAAATTCTTTGATACAGAAAGTAAGCCATGCCACCCCATATTATGATCTTTGTGTATCTACCCTCCGATGCGATAAAACAAGCGAAAAATCTGATACACAAGGTCTAGTATCCCTTGTGGTGAAACAAGCAGAAGCTAATGCATTAAGCACGTTCACGTACATCTTGAACCAACTGCTTACAAATGGAATGGCACTTCAAGAGTCAATCAAGGATTTGGAAAATGGTAACTTCGACTCTGCAGGACGCAAGGCAAGTGATGCTAGAGAACAAGTTAAGATCTGCGGAAGTGATTTTGCAAGGTTCAGACGTGTCACTTATCCTCCAAACTTGGCAAAGAGGGAAGCGCTGCTAGAGCAACTGTGTGATATTGCTTCTAATATTATTTCTAGTCTTTTGGTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

17.62

Weight (kDa)

5.81

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 31 - 152 2.5e-07 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 366
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 242
AfeI AGCGCT 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 3 cut(s) 58, 250, 281
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 2 cut(s) 80, 218
AluI AGCT 2 cut(s) 80, 218
Aor51HI AGCGCT 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 77, 430
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 214
BbvI GCAGC 2 cut(s) 89, 417
BccI CCATC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 202
BfaI CTAG 4 cut(s) 188, 345, 434, 471
BfmI CTRYAG 2 cut(s) 12, 321
BfoI RGCGCY 1 cut(s) 431
BfuI GTATCC 1 cut(s) 202
BglII AGATCT 1 cut(s) 360
BisI GCNGC 2 cut(s) 78, 431
BlsI GCNGC 2 cut(s) 79, 432
BmgBI CACGTC 1 cut(s) 392
BmsI GCATC 2 cut(s) 140, 331
BsaAI YACGTR 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
BseXI GCAGC 2 cut(s) 89, 417
Bsp143I GATC 2 cut(s) 127, 360
BspACI CCGC 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 325
BssMI GATC 2 cut(s) 127, 360
Bst4CI ACNGT 2 cut(s) 16, 444
Bst6I CTCTTC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 130, 363
BstMBI GATC 2 cut(s) 127, 360
BstMWI GCNNNNNNNGC 2 cut(s) 341, 436
BstSFI CTRYAG 2 cut(s) 12, 321
BstV1I GCAGC 2 cut(s) 89, 417
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 202
BtrI CACGTC 1 cut(s) 392
CfoI GCGC 1 cut(s) 430
CseI GACGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 80, 108, 218
CviKI_1 RGCY 3 cut(s) 80, 108, 218
CviQI GTAC 1 cut(s) 241
DpnI GATC 2 cut(s) 129, 362
DpnII GATC 2 cut(s) 127, 360
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 1 cut(s) 113
FaiI YATR 3 cut(s) 111, 121, 126
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 78, 431
Fsp4HI GCNGC 2 cut(s) 78, 431
FspBI CTAG 4 cut(s) 188, 345, 434, 471
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 78, 431
HaeII RGCGCY 1 cut(s) 431
HgaI GACGC 1 cut(s) 336
HhaI GCGC 1 cut(s) 430
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 2 cut(s) 284, 317
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 149, 175, 389
Hpy188III TCNNGA 2 cut(s) 247, 281
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4III ACNGT 2 cut(s) 16, 444
HpyCH4IV ACGT 3 cut(s) 233, 239, 391
HpyCH4V TGCA 3 cut(s) 224, 323, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 436
HpySE526I ACGT 3 cut(s) 233, 239, 391
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 127, 360
LpnPI CCDG 1 cut(s) 309
Lsp1109I GCAGC 2 cut(s) 89, 417
LweI GCATC 2 cut(s) 140, 331
MaeI CTAG 4 cut(s) 188, 345, 434, 471
MaeII ACGT 3 cut(s) 233, 239, 391
MaeIII GTNAC 3 cut(s) 21, 308, 394
MalI GATC 2 cut(s) 129, 362
MboI GATC 2 cut(s) 127, 360
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 360
MluCI AATT 2 cut(s) 62, 85
MlyI GAGTC 2 cut(s) 293, 311
MnlI CCTC 4 cut(s) 62, 155, 414, 414
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 2 cut(s) 227, 357
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 341, 436
NdeII GATC 2 cut(s) 127, 360
NlaIII CATG 1 cut(s) 113
NmuCI GTSAC 2 cut(s) 21, 394
NsiI ATGCAT 1 cut(s) 226
PkrI GCNGC 2 cut(s) 79, 432
PleI GAGTC 2 cut(s) 292, 311
PpsI GAGTC 2 cut(s) 292, 311
Ppu21I YACGTR 1 cut(s) 240
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 227, 357
SatI GCNGC 2 cut(s) 78, 431
Sau3AI GATC 2 cut(s) 127, 360
SchI GAGTC 2 cut(s) 293, 311
SetI ASST 7 cut(s) 82, 187, 220, 236, 242, 386, 394
SfaNI GCATC 2 cut(s) 140, 331
SfcI CTRYAG 2 cut(s) 12, 321
Sse9I AATT 2 cut(s) 62, 85
SsiI CCGC 1 cut(s) 366
SspI AATATT 1 cut(s) 463
SspMI CTAG 4 cut(s) 188, 345, 434, 471
TaaI ACNGT 2 cut(s) 16, 444
TaiI ACGT 3 cut(s) 236, 242, 394
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 62, 85
Tru1I TTAA 2 cut(s) 227, 357
Tru9I TTAA 2 cut(s) 227, 357
TseFI GTSAC 2 cut(s) 21, 394
TseI GCWGC 2 cut(s) 77, 430
Tsp45I GTSAC 2 cut(s) 21, 394
XapI RAATTY 1 cut(s) 85
XspI CTAG 4 cut(s) 188, 345, 434, 471
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.